BioMed Research International

BioMed Research International / 2018 / Article
Special Issue

Bioactive Natural Products 2017

View this Special Issue

Research Article | Open Access

Volume 2018 |Article ID 3798105 |

Rizwana Sarwar, Umar Farooq, Sadia Naz, Nadia Riaz, Syed Majid Bukhari, Abdur Rauf, Yahia N. Mabkhot, Salim S. Al-Showiman, "Isolation and Characterization of Two New Antimicrobial Acids from Quercus incana (Bluejack Oak)", BioMed Research International, vol. 2018, Article ID 3798105, 5 pages, 2018.

Isolation and Characterization of Two New Antimicrobial Acids from Quercus incana (Bluejack Oak)

Academic Editor: Nikos Chorianopoulos
Received24 Aug 2017
Accepted27 Nov 2017
Published28 Jan 2018


Two new compounds were purified from ethyl acetate fraction of Quercus incana. The structure of these compounds is mainly established by using advanced spectroscopic technique such as UV, IR, one-dimensional (ID) and two-dimensional (2D) NMR techniques, and EI mass. The structural formula was deduced to be 4-hydroxydecanoic acid and 4-hydroxy-3-(hydroxymethyl) pentanoic acid . Both isolated compounds were tested for their antimicrobial potential and showed promising antifungal activity against Aspergillus niger and Aspergillus flavus.

1. Introduction

The family Fagaceae is large family comprising 8 genera and about 800–1100 species. Quercus is the largest genus of family Fagaceae having huge medicinal importance and mostly found in dry conditions [1]. The genus Quercus have long been considered among the clades of woody angiosperms in terms of species diversity, horticultural merit, ecological dominance, and industrial and economic values [2]. The Quercus robur is the only cultivated species while other 600 known species are found in temperate regions of the Northern Hemisphere, Southward through Central America to Colombia and through Turkey to Pakistan [3].

The wood is durable, is attractively grained, and is mostly utilized for timber purposes; it is particularly important in shipbuilding, construction for flooring, furniture, railroad ties, and veneers. The bark of Quercus spp. has been used for medicinal purposes and is an important source of phenolic compounds like tannins which are used for tanning leather and wine production [4]. The fruit (acorn) of Quercus has husk coating which is edible and highly nutritious and rich in carbohydrates and protein. Quercus (oak) species are utilized in conventional pharmaceutical, as astringent, antiseptic, and hemostatic and in addition to the treatment of acute diarrhea, hemorrhoid, and oral, genital, and anal mucosa inflammation. Moreover, the decoction plants from this genus can be used against burns and added to ointments for the healing of cuts [5]. Oak seeds are a major source of sugar, amino acids, lipids, and different sterols [6]. Quercus species have been utilized against problems of skin, wounds and gastrointestinal illnesses [7], astringent, mellow germ-free, small cuts [8], and mouth washes [9] all suggesting their antimicrobial potential.

Genus Quercus is characterized by six species found mostly in Northern areas of Pakistan. The most promising timber specie is Quercus incana Roxb. (Blue jack oak or cinnamon oak) locally called Ban shindar, Kharpata serci (Punjabi), Rein (Hindko), and Serie (Pushto) [10]. The Q. incana has huge medicinal usage; it may be used as astringent [11], diuretic, and antidiarrheal agent and for treatment of asthma. Bark and leaves of Q. incana may be used as antipyretic, antirheumatism, antidiabetic, and antiarthritic purposes [12]. These medical applications and therapeutic potential of Quercus incana prompted us to carry out the phytochemical investigation to explore biologically active compounds.

2. Material and Methods

2.1. Experimental Procedures

The ethyl acetate soluble fraction was selected for isolation of bioactive compounds using column chromatographic analysis having column silica and flash silica gel as an adsorbent material. The column was eluted by using n-hexane and ethyl acetate with increasing polarity, which yield two new compounds 4-hydroxy decanoic acid [1] and 4-hydroxy-3-(hydroxymethyl) pentanoic acid [2] by increasing polarity. The purity of compounds [1-2] was checked by using precoated TLC plates. The IR spectrum was recorded by using spectrophotometer JASCO-320A. The EI mass was recoded on double focusing Varian MAT-312 Spectrometer. 1H-NMR and 13C-NMR spectra were measured by using advance Bruker AMX-300 spectrometer machine. The chemical shifts in parts per million (δ) relative to tetramethylsilane as an internal standard and scalar (J) were described in Hz.

2.2. Plant Extraction and Fractionation

Extraction and fractionation of Quercus incana were reported in our previous study [13]. Ethyl acetate soluble fraction was subjected to repeated column chromatography which yielded two pure compounds [1-2].

2.3. Antibacterial Activity of Compounds [1-2]

Antibacterial activity was performed by agar well diffusion method with some modifications [14]. Three Gram-positive (Staphylococcus aureus, Micrococcus luteus, and Bacillus subtilis) and Gram-negative (Escherichia coli, Pseudomonas pickettii, and Shigella flexneri) pathogens were used in study. 10 µg of each compounds [1-2] was dissolved in 1 mL DMSO. Standard drug and each sample (20 μL) were poured in 6 mm well. The assay plates were incubated at 37°C for 24 hrs. The zone of inhibition was dignified in mm and DMSO was used as a negative control in the experiment.

2.4. Antifungal Assay

Disc diffusion methods were used for determination of antifungal effects by using two selected fungal strains such as Aspergillus niger and Aspergillus flavus [15]. DMSO was used as a solvent; before applying compounds on petri plates DMSO was completely evaporated.

Characterization of Compound 1. Colorless oil; IR (KBr) 3622 br (OH), 1714 (C=O) cm−1. + 34.80° (, CHCl3). EI-MS : (rel. int.) 188 (15), 176 (9), 157 (35), 128 (5), 115 (9). HR-EI-MS: 188. 1420 (calcd. for 188.1412 for C10H20O3). 1H-NMR (CDCl3, 300 MHz): 3.62 (1H, m, H-4), 0.88 (3H, t, J = 7.7 Hz, H-10), 2.08 (2H, m, H-2), 1.49, 1.62 (2H, m, H-3), 1.45 (2H, m, H-5), 1.47, 1.33 (2H, m, H-6), 1.30 (2H, m, H-7), 1.28 (2H, m, H-8), 1.29 (2H, m, H-9). 13C-NMR (CDCl3, 75 MHz): 179.6 (C-1), 72.1 (C-4), 13.9 (C-10), 34.6 (C-2), 34.9 (C-3), 37.9 (C-5), 26.1 (C-6), 29.8 (C-7), 32.0 (C-8), 22.1 (C-9).

Characterization of Compound 2. Colorless oil: IR (KBr) 3495 (OH), 1708 (C=O) cm−1. + 53.60° (, CHCl3). EI-MS : (rel. int.%) 131 131 (10), 115 (8), 86 (100), 71 (31). HR-EI-MS: 131.0744 (calcd. 131.0736 for C6H11O3-OH). 1H-NMR (CDCl3, 300 MHz): 2.35 (1H, m, H-2), 2.04 (1H, m, H-2), 2.58 (1H, m, H-3), 3.92 (1H, m, H-4), 1.23 (3H, d, J = 6.9 Hz, H-5), 4.31 (2H, m, H-1′).13C-NMR (CDCl3, 75 MHz): 177.5 (C-1), 27.3 (C-2), 45.9 (C-3), 68.1 (C-4), 20.9 (C-5), 65.5 (C-1′).

3. Result and Discussion

Ethyl acetate soluble fraction was subjected to repeated column chromatography on silica gel using n-hexane and ethyl acetate as a solvent with gradual increasing in polarity up to 100% ethyl acetate, which resulted in four subfractions (Fractions AD). The fractions obtained based on TLC profile were resubjected to pencil column chromatography and eluted with n-hexane : EtOAc, 25 : 75 and n-hexane: EtOAc, 30 : 70 to purify compound 1 (10.5 mg) and compound 2 (9.8 mg) (Figure 1).

Compound 1 was isolated as a colorless oil and has molecular formula of C10H20O3 as suggested by molecular ion peak at 188 in HR-EIMS. The other fragment peaks were obtained at 176, 157, 128, and 115. The HR-EIMS gave exact mass of compound 1 which was at 188.1420 (calcd. 188.1412). The IR spectrum displayed absorption bands for hydroxyl and carbonyl groups at 3622 and 1714 cm−1, respectively. The 1H-NMR spectrum of compound 1 exhibited typical signal for aliphatic acid skeleton, which was strongly supported by DEPT experiment. The 13C-NMR spectrum revealed the presence of one methyl, one methine, seven methylene, and one quaternary carbon signals. The methine signal appearing at 3.62 (1H, m) was assigned to H-4 while methyl group resonated at 0.88 (3H, t, J = 7.7 Hz). Typical methylene signals were resonated as multiplet for seven methylene carbons at 2.08 (2H, m), 1.49 (1H, m), 1.45 (2H, m), 1.33 (1H, m), 1.47 (1H, m), 1.30 (2H, m), 1.28 (2H, m), and 1.29 (2H, m) assigned to H-2, H-3, H-5, H-6, H-7, H-8, and H-9, respectively (Table 1). The 13C-NMR spectrum (BB and DEPT) corroborated the presence of seven methylene carbons, one methine carbon, one terminal methyl carbon, and one quaternary carbon. The carbonyl carbon showed signals at 179.6 whereas methine signal centered at 72.1. The 13C-NMR chemical shift of CH3-C10 was observed at 13.9 and seven methylene carbons appeared at 34.6, 34.9, 37.9, 26.1, 29.8, 32.0, and 22.1 for C-2, C-3, C-5, C-6, C-7, C-8, and C-9, respectively (Table 2). The HMBC and COSY spectra were quite helpful for accurate placement of various substituents in the molecule. The HMBC spectrum showed strong correlation of methine proton at 3.62 (H-4) with C-2, C-3, C-5, and C-6 [13]. The methyl proton at 0.88 showed strong HMBC correlation with C-9 ( 22.1), C-8 ( 32.0) which was quite supportive in the establishment of structure. Finally all spectral data confirmed, compound 1 as an aliphatic acid having straight chain of -(CH2)7-CH3- moiety [16] and was proposed to be 4-hydroxy decanoic acid.


22.08, m2.04, m
2.35, m
31.62, m
1.49, m
2.58, m
43.62, m3.92, m
51.45, m1.23 (1H, d, J = 6.9 Hz)
61.47, m
1.33, m
71.30, m-
81.28, m-
91.29, m-
100.88 (t, J = 7.7)-
1′-4.31, m



Compound 2 was isolated as colorless oil. Its structure was mainly established by 1H-NMR and high resolution mass spectroscopy and supported by 13C-NMR spectrum. Its molecular formula C6H12O4 was concluded from the accurate mass measurement of peak at 131, corresponding to molecular composition C6H11O3-OH. In addition to its molecular ion peak, it showed some characteristic fragments at 115, 86, and 71. The HR-EIMS gave exact mass of compound 2 at 131.0744 (calcd. 131.0736 for C6H11O3-OH). The IR spectrum showed absorption bands at 3495 cm−1 and 1708 cm−1 indicating presence of the hydroxyl group and carbonyl carbon, respectively. Similarly, broad absorption centered at 2935 cm−1 suggested the presence of carboxylic acid. The 1H-NMR showed a signal for a secondary methyl group at δ 1.23 (3H, d, J = 6.9 Hz, H-5), connected to a methine group resonated at 3.92 (1H, m, H-4) possessing hydroxyl group, while the other methine signal appeared at 2.58 (1H, m, H-3). The downfield methylene bearing hydroxyl group appeared at 4.31 (2H, m, H-1′) and the other methylene centered at 2.04 (1H, m, H-2) and 2.35 (1H, m, H-2) was directly connected to carboxylic acid (Table 1). The 13C-NMR spectrum confirmed the presence of one methyl carbon, two methylene groups, two methine carbons, and one quaternary carbon in the structure.

In 13C-NMR spectrum, signal for secondary methyl appeared at 20.9 whereas the methine signal bearing hydroxyl group was observed at 68.1 for C-4. The signal for another methine appeared at 45.9 for C-3. The side chain methylene having free hydroxyl group resonated at 65.5, while the second methylene group at position C-2 appeared at 27.3. Similarly, the quaternary carbon in the form of carboxylic acid showed signal at 177.5 (Table 2). Based on the HMBC and H-H COSY correlation (Figure 2), the connectivity of the C-1 to C-5 chain was found in agreement with literature [17]. The HMBC spectrum showed H-C correlation of CH3-5 with that of C-4 and C-3. Similarly the position of hydroxyl group at C-1′ was confirmed by strong HMBC correlation of CH2-1′ with C-3, C-2, and C-4 and weak interaction with C-1. The structure of compound 2 was mainly established by 1H-NMR, high resolution mass spectrometry and supported by 13C-NMR spectrum. From all spectral data it was evident that compound 2 was 4-hydroxy-3-(hydroxymethyl) pentanoic acid.

3.1. Antibacterial Activity

The antibacterial activity of isolated compounds [1-2] was determined by agar well diffusion method (Table 3). Compound 1 was significantly active against Bacillus subtilis, Staphylococcus aureus, and Micrococcus luteus (Gram-positive). Both compounds [1-2] showed promising antibacterial activity against Staphylococcus aureus with 16 mm and 13 mm zone of inhibition. Compound 2 was moderately active against Bacillus subtilis and Micrococcus luteus with 5 mm and 9 mm zone of inhibition. Both compounds were inactive against Escherichia coli and Shigella flexneri.

S. numberCultureZone of inhibition (mm)

1Bacillus subtilis858
2Staphylococcus aureus161316
3Micrococcus luteus11918
4Pseudomonas pickettii000
5Escherichia coli000
6Shigella flexneri6914

3.2. Antifungal Activity

Antifungal activity of both compounds [1-2] was done against Aspergillus flavus and Aspergillus niger. Both compounds [1-2] showed immense activity against Aspergillus niger with 15 mm ± 0.70 and 22 mm ± 0.57 zone of inhibition (Table 4). Moderate activity was observed by compound 1 against Aspergillus flavus having 12 mm ± 0.50 zone of inhibition.

ExtractPathogenic fungi
Aspergillus flavus Aspergillus niger

112 mm ± 0.5015 mm ± 0.70
217 mm ± 0.2822 mm ± 0.57
Nystatin (standard)16 mm ± 0.9221 mm ± 0.28

Note. Each value in the table was obtained by calculating the average of three experiments.

4. Conclusion

The current study describes the isolation, characterization, and antimicrobial activity of isolated compounds from ethyl acetate fraction of Quercus incana. Both compounds displayed promising antimicrobial activity against human bacterial and fungal strains. Therefore, these isolated compounds may be considered as the lead compounds as an antimicrobial agents.

Conflicts of Interest

There are no conflicts of interest regarding this paper.


The authors extend their appreciation to the Deanship of Scientific Research at King Saud University for its funding this prolific research group no. RGP-007.


  1. K. C. Nixon and W. L. Crepet, “Trigonobalanus (Fagaceae): Taxonomic Status and Phylogenetic Relationships,” American Journal of Botany, vol. 76, no. 6, p. 828, 1989. View at: Publisher Site | Google Scholar
  2. M. Kappelle, “Neotropical montane oak forests: overview and outlook,” in Ecology and Conservation of Neotropical Montane Oak Forests, pp. 449–467, Springer, 2006. View at: Publisher Site | Google Scholar
  3. E. Nisar and S. I. Ali, Flora of West Pakistan, Botany Department, Gordon College, Rawalpindi, Pakistan, 1976.
  4. S. T. Shah, H. Ahmad, and R. Zamir, “Pollen morphology of three species of Quercus (Family Fagaceae,” Journal of Agriculture, Forestry and the Social Sciences, vol. 1, no. 4, pp. 359-360, 2005. View at: Google Scholar
  5. L. Bremness, Herbs (Handbooks), Dorling Kindersley Publishers LTD, London, UK, 1994.
  6. S. Rakić, S. Petrović, J. Kukić et al., “Influence of thermal treatment on phenolic compounds and antioxidant properties of oak acorns from Serbia,” Food Chemistry, vol. 104, no. 2, pp. 830–834, 2007. View at: Publisher Site | Google Scholar
  7. L. Viegi, A. Pieroni, P. M. Guarrera, and R. Vangelisti, “A review of plants used in folk veterinary medicine in Italy as basis for a databank,” Journal of Ethnopharmacology, vol. 89, no. 2-3, pp. 221–244, 2003. View at: Publisher Site | Google Scholar
  8. M. L. Leporatti and S. Ivancheva, “Preliminary comparative analysis of medicinal plants used in the traditional medicine of Bulgaria and Italy,” Journal of Ethnopharmacology, vol. 87, no. 2-3, pp. 123–142, 2003. View at: Publisher Site | Google Scholar
  9. T. Aburjai, M. Hudaib, R. Tayyem, M. Yousef, and M. Qishawi, “Ethnopharmacological survey of medicinal herbs in Jordan, the Ajloun Heights region,” Journal of Ethnopharmacology, vol. 110, no. 2, pp. 294–304, 2007. View at: Publisher Site | Google Scholar
  10. M. Hussain and A. Ghani, “Herbal remidies used for gastrointestinal disorders in Kaghan valley,” Pakistan Journal of Weed Science Research in SearchWorks, vol. 14, no. 3-4, pp. 169–200, 2008. View at: Google Scholar
  11. F. Haq, H. Ahmad, and M. Alam, “Traditional uses of medicinal plants of Nandiar Khuwarr catchment (District Battagram), Pakistan,” Journal of Medicinal Plants Research, vol. 5, no. 1, pp. 39–48, 2011. View at: Google Scholar
  12. M. I. Shinwari and M. A. Khan, “Folk use of medicinal herbs of margalla hills National Park, Islamabad,” Journal of Ethnopharmacology, vol. 69, no. 1, pp. 45–56, 2000. View at: Publisher Site | Google Scholar
  13. R. Sarwar, U. Farooq, A. Khan et al., “Evaluation of antioxidant, free radical scavenging, and antimicrobial activity of Quercus incana Roxb.,” Frontiers in Pharmacology, vol. 6, article no. 277, 2015. View at: Publisher Site | Google Scholar
  14. J. Harit, A. Barapatre, M. Prajapati, K. R. Aadil, and S. Senapati, “Antimicrobial activity of rhizome of selected Curcuma variety,” International Journal of Life Sciences Biotechnology and Pharma Research, vol. 2, pp. 183–189, 2013. View at: Google Scholar
  15. V. Bobbarala, V. R. Vadlapudi, and C. Naidu, “Antimicrobial potentialities of mangrove plant Avicennia marina,” Journal of Pharmacy Research, vol. 2, no. 6, 2009. View at: Google Scholar
  16. T. N. Misra, R. S. Singh, J. Upadhyay, and R. Srivastava, “Isolation of a natural sterol and an aliphatic acid from Vernonia cinerea,” Phytochemistry, vol. 23, no. 2, pp. 415–417, 1984. View at: Publisher Site | Google Scholar
  17. K. Krohn, U. Farooq, U. Flörke et al., “Secondary metabolites isolated from an endophytic Phoma sp. - Absolute configuration of tetrahydropyrenophorol using the solid-state TDDFT CD methodology,” European Journal of Organic Chemistry, no. 19, pp. 3206–3211, 2007. View at: Publisher Site | Google Scholar

Copyright © 2018 Rizwana Sarwar et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

More related articles

 PDF Download Citation Citation
 Download other formatsMore
 Order printed copiesOrder

Related articles

We are committed to sharing findings related to COVID-19 as quickly as possible. We will be providing unlimited waivers of publication charges for accepted research articles as well as case reports and case series related to COVID-19. Review articles are excluded from this waiver policy. Sign up here as a reviewer to help fast-track new submissions.