Pathway Network Analysis of Complex Diseases Based on Multiple Biological Networks

Table 2

Top 15 pathways identified with our method.

Rank	Pathway Name	gene	p-value
1	KEGG_FATTY_ACID_METABOLISM	42	5.76e-12
2	KEGG_STARCH_AND_SUCROSE_METABOLISM	52	0.0047780
3	KEGG_SPLICEOSOME	128	3.63e-12
4	KEGG_PPAR_SIGNALING_PATHWAY	69	8.64e-21
5	KEGG_P53_SIGNALING_PATHWAY	69	0.0005045
6	KEGG_ADIPOCYTOKINE_SIGNALING_PATHWAY	68	2.23e-09
7	PID_SHP2_PATHWAY	58	2.40e-05
8	PID_BARD1_PATHWAY	29	0.0010373
9	REACTOME_MRNA_3_END_PROCESSING	36	0.0137007
10	REACTOME_METABOLISM_OF_NON_CODING_RNA	49	0.0008123
11	REACTOME_CELL_CYCLE	421	1.02e-08
12	REACTOME_SIGNALING_BY_BMP	23	0.0247461
13	REACTOME_TRANSPORT_OF_MATURE_TRANSCRIPT_TO_CYTOPLASM	54	0.0426007
14	REACTOME_CELL_CYCLE_MITOTIC	325	9.35e-07
15	REACTOME_PROCESSING_OF_CAPPED_INTRONLESS_PRE_MRNA	23	0.0127461