High Intraspecific Genetic Diversity of Nocardia brasiliensis, a Pathogen Responsible for Cutaneous Nocardiosis Found in France: Phylogenetic Relationships by Using sod and hsp65 Genes

Table 1

Table of clinical strains including the type of tropism observed in host, their corresponding sodA/hsp65 genotypes, and drug phenotypes.

Sample date	Nature of sampling	Patient record	Immunosuppressed	Genotype; sodA/hsp65	Tropism	Pristinamycin	Imipenem	Amikacin	Trimethoprim + sulfamethoxazole
04/2002	Intraoperative tissue	02.56	No	G3	Cutaneous	R	R	S	S
12/2003	Pus from cutaneous thigh abscess	04.21	Yes	G1	Cutaneous	R	S	S	S
2004	Pus from cutaneous abscess	04.101	No	G3	Cutaneous	R	R	S	S
07/2005	Expectoration then LBA	05.64	Yes	G1	Lung	R	S	S	S
01/2005	Skin biopsy	05.12	No	G1	Cutaneous	R	S	S	S
07/2005	Phalanx biopsy	05.63	No	G3	Cutaneous	R	R	S	S
2005	CSF	05.77	No	G1	Brain	R	R	S	S
11/2005	-	3247	No	G3	Unknown	R	S	S	S
2007	Cutaneous abscess	07.168	No	G3	Cutaneous	R	R	S	S
10/2008	Wound of forehead	08.178	No	G3	Cutaneous	R	S	S	S
11/2008	Subcutaneous abscess	08.188	No	G3	Subcutaneous	R	R	S	S
10/2008	Elbow abscess	2985	No	G3	Cutaneous	R	R	S	S
03/2008	-	9044	No	G2	Unknown	R	R	S	S
03/2009	Pus of leg abscess	09.71	No	G2	Cutaneous	R	S	S	S
04/2009	Bronchial aspiration	09.106	No	G1	Lung	R	S	S	S
10/2009	Bronchial aspiration	09.244	Yes	G1	Lung	R	S	S	S
12/2009	Finger skin	09.280	No	G3	Cutaneous	R	R	S	S
10/2009	Pus from the lip	10.16	No	G3	Cutaneous	R	R	S	S
02/2010	Finger abscess	10.35	No	G2	Cutaneous	R	R	S	S
05/2010	Hand abscess	10.82	No	G3	Cutaneous	R	R	S	S
05/2010	Toe abscess	10.93	Yes	G3	Cutaneous	R	R	S	S
09/2010	Leg wound	10.146	No	G3	Cutaneous	R	R	S	S
11/2010	Pus finger	10.180	No	G3	Cutaneous	R	R	S	S
11/2010	Leg wound	12786	No	G2	Cutaneous	R	R	S	S
04/2010	-	14229	No	G2	Unknown	R	S	S	S
07/2010	Sepsis hand	45762	No	G3	Cutaneous	R	R	S	S
2011	Pus	11.44	No	G2	Cutaneous	R	R	S	S
05/2011	Cutaneous abscess	11.73	No	G1	Cutaneous	R	S	S	S
05/2011	Hand wound	11.80	No	G1	Cutaneous	R	S	S	S
08/2011	Cutaneous	11.116	No	G2	Cutaneous	R	R	S	S
2011	Thigh abscess	11.140	No	G2	Cutaneous	R	R	S	S
09/2011	Knee wound	11.151	No	G3	Cutaneous	R	R	S	S
2011	Hand wound	11.172	No	G3	Cutaneous	R	R	S	S
12/2011	Cutaneous abscess	11.189	No	G3	Cutaneous	R	R	S	S
2012	-	12.08	No	G1	Unknown	R	S	S	S
02/2012	Cutaneous abscess	12.28	No	G3	Cutaneous	R	R	S	S