Phylogeny of Maleae (Rosaceae) Based on Multiple Chloroplast Regions: Implications to Genera Circumscription
Table 3
Variability of 15 chloroplast regions among species in Maleae and the maximum parsimony tree scores of all taxa.
Gene regions
La
Sc
S
Is
NH
k
atpB-rbcL
39
796
659
33
9
25
0.00422
4.15
177
0.921
0.781
matK
41
2045
1761
167
47
32
0.00879
8.17
663
0.741
0.538
ndhF
39
1973
1821
148
38
29
0.00937
7.5
694
0.745
0.567
petA-psbJ
34
1370
1072
155
36
27
0.01046
11.31
554
0.791
0.629
psbA-trnH
37
283
222
34
10
15
0.02547
12.01
196
0.789
0.436
psbM-trnD
34
1503
1225
126
33
27
0.00901
8.38
589
0.81
0.666
rbcL
38
1353
1293
60
25
25
0.00539
4.43
296
0.547
0.442
rpl16
40
1178
940
124
31
32
0.00804
10.53
463
0.689
0.518
rpl20-rps12
37
743
677
42
15
30
0.00710
5.65
230
0.752
0.617
rps16
39
964
772
84
22
28
0.00999
8.71
378
0.746
0.639
trnC-ycf6
36
1032
810
90
30
28
0.01084
8.72
525
0.785
0.616
trnH-rpl2
36
205
189
11
5
5
0.00391
5.37
196
0.789
0.436
trnL-trnF
41
1088
944
90
24
26
0.00783
8.27
420
0.757
0.612
trnS-trnG
36
895
661
102
20
27
0.01011
11.4
470
0.781
0.528
ycf1
34
866
742
88
21
28
0.01210
10.16
489
0.765
0.595
, number of species; La, aligned length; Sc, sites considered; , number of polymorphic sites, excluding sites with missing data; Is, parsimony-informative site; NH, number of haplotypes; , nucleotide diversity; , average number of nucleotide differences; , the tree length; CI, consistency index; RI, retention index. Including all taxa.
