Research Article
Genome-Wide Investigation and Expression Profiling of HD-Zip Transcription Factors in Foxtail Millet (Setaria italica L.)
Table 1
Feature list of 47 genes identified in foxtail millet and their sequence characteristics.
| NIPGR ID | Phytozome Identifier | Physical position on foxtail millet genome | Protein length (aa) | PI | Molecular weight (Da) | Intron | Phylogeny group | Chromosome | Start position (bp) | End position (bp) |
| Sihdz01 | Seita.1G087900 | 1 | 7798792 | 7799706 | 223 | 9.63 | 24184.04 | 1 | I |
| Sihdz02 | Seita.1G088000 | 1 | 7808171 | 7809619 | 220 | 9.58 | 23994.74 | 1 | I |
| Sihdz03 | Seita.1G201700 | 1 | 28159965 | 28165140 | 327 | 6.1 | 36098.44 | 3 | I |
| Sihdz04 | Seita.1G253700 | 1 | 32918259 | 32922133 | 236 | 5.4 | 26468.23 | 1 | II |
| Sihdz05 | Seita.1G306100 | 1 | 36983614 | 36985721 | 324 | 4.6 | 35439.06 | 3 | II |
| Sihdz06 | Seita.1G335800 | 1 | 39351189 | 39355603 | 711 | 6.2 | 77892.71 | 9 | IV |
| Sihdz07 | Seita.2G112400 | 2 | 10947386 | 10950661 | 735 | 6.4 | 79319.1 | 7 | IV |
| Sihdz08 | Seita.2G114000 | 2 | 11221021 | 11225092 | 712 | 6.21 | 78529.74 | 7 | IV |
| Sihdz09 | Seita.2G193200 | 2 | 28965749 | 28968902 | 303 | 4.65 | 32897.23 | 2 | II |
| Sihdz10 | Seita.2G224000 | 2 | 32601420 | 32603671 | 352 | 6.06 | 36851.92 | 3 | I | Seita.2G224000.2 | 2 | 32601420 | 32603671 | 419 | 9.69 | 43426.69 | | | Seita.2G224000.3 | 2 | 32601420 | 32603671 | 313 | 9.32 | 33026.8 | | |
| Sihdz11 | Seita.2G236800 | 2 | 34125151 | 34127695 | 265 | 4.82 | 28604.67 | 2 | II |
| Sihdz12 | Seita.2G282200 | 2 | 37895221 | 37901754 | 860 | 6.17 | 91157.98 | 8 | IV |
| Sihdz13 | Seita.2G284000 | 2 | 38029446 | 38031046 | 237 | 5.3 | 26082.92 | 1 | II |
| Sihdz14 | Seita.2G368600 | 2 | 44278030 | 44279425 | 230 | 6.02 | 25541.64 | 2 | II |
| Sihdz15 | Seita.3G395000 | 3 | 49640251 | 49646758 | 853 | 6.37 | 92896.04 | 17 | III |
| Sihdz16 | Seita.4G029000 | 4 | 1875175 | 1876650 | 271 | 9.4 | 28195.86 | 1 | I |
| Sihdz17 | Seita.4G029200 | 4 | 1896185 | 1897677 | 291 | 9.15 | 30526.21 | 1 | I |
| Sihdz18 | Seita.4G084600 | 4 | 6822689 | 6826925 | 699 | 5.89 | 75992.54 | 9 | IV |
| Sihdz19 | Seita.4G245400 | 4 | 36871689 | 36872853 | 223 | 9.28 | 24394.21 | 2 | I |
| Sihdz20 | Seita.5G079000 | 5 | 6743029 | 6750110 | 806 | 5.3 | 86426.43 | 8 | IV |
| Sihdz21 | Seita.5G141300 | 5 | 12454752 | 12459714 | 855 | 5.56 | 92530.12 | 16 | III |
| Sihdz22 | Seita.5G241600 | 5 | 30455176 | 30458970 | 224 | 9.35 | 24654.92 | 3 | I |
| Sihdz23 | Seita.5G326100 | 5 | 37528162 | 37531618 | 800 | 6.3 | 85890.61 | 8 | IV |
| Sihdz24 | Seita.5G344800 | 5 | 38943201 | 38948786 | 710 | 8.5 | 78461.92 | 10 | IV |
| Sihdz25 | Seita.6G039900 | 6 | 3018210 | 3023859 | 785 | 5.69 | 84606.48 | 9 | IV |
| Sihdz26 | Seita.6G072700 | 6 | 6484850 | 6490160 | 793 | 5.6 | 85138.95 | 6 | IV |
| Sihdz27 | Seita.6G145000 | 6 | 25873860 | 25878078 | 280 | 4.81 | 30601.69 | 2 | II |
| Sihdz28 | Seita.6G176400 | 6 | 30029766 | 30031922 | 355 | 7.06 | 36870.92 | 3 | I | Seita.6G176400.2 | 6 | 30029766 | 30031922 | 353 | 6.68 | 36614.61 | | |
| Sihdz29 | Seita.6G187700 | 6 | 31175081 | 31177598 | 279 | 4.83 | 29580.76 | 3 | II |
| Sihdz30 | Seita.7G060900 | 7 | 16153965 | 16157882 | 715 | 6.07 | 78947.15 | 6 | IV |
| Sihdz31 | Seita.7G061100 | 7 | 16176368 | 16179683 | 730 | 6.01 | 80631.47 | 7 | IV |
| Sihdz32 | Seita.7G063300 | 7 | 16569209 | 16575494 | 674 | 6.3 | 74387.26 | 8 | IV |
| Sihdz33 | Seita.7G184600 | 7 | 26206329 | 26207830 | 335 | 6.6 | 37451.98 | 2 | II |
| Sihdz34 | Seita.7G187800 | 7 | 26435171 | 26436840 | 237 | 9.06 | 26043.72 | 3 | I |
| Sihdz35 | Seita.7G203300 | 7 | 27549926 | 27555890 | 793 | 5.87 | 85333.81 | 8 | IV |
| Sihdz36 | Seita.7G246700 | 7 | 30566314 | 30572371 | 781 | 5.48 | 84480.42 | 9 | IV |
| Sihdz37 | Seita.9G158800 | 9 | 10515531 | 10521227 | 856 | 6.16 | 93049.81 | 17 | III |
| Sihdz38 | Seita.9G219700 | 9 | 16264055 | 16271199 | 839 | 5.83 | 91968.72 | 17 | III |
| Sihdz39 | Seita.9G248400 | 9 | 19579512 | 19581764 | 299 | 5.1 | 32729.64 | 2 | II |
| Sihdz40 | Seita.9G258100 | 9 | 21176272 | 21178630 | 366 | 6.21 | 38925.15 | 1 | II |
| Sihdz41 | Seita.9G301000 | 9 | 34846306 | 34848095 | 247 | 8.69 | 27267.91 | 2 | I |
| Sihdz42 | Seita.9G309800 | 9 | 35775895 | 35781959 | 871 | 5.47 | 93247.34 | 9 | IV | Seita.9G309800.2 | 9 | 35775895 | 35781959 | 881 | 5.43 | 94315.57 | | |
| Sihdz43 | Seita.9G321500 | 9 | 36997661 | 37000034 | 352 | 8.93 | 37940.91 | 3 | I | Seita.9G321500.2 | 9 | 36997661 | 37000034 | 347 | 8.79 | 37374.21 | | |
| Sihdz44 | Seita.9G481800 | 9 | 52201230 | 52203593 | 278 | 8.07 | 29367.01 | 2 | I |
| Sihdz45 | Seita.9G511500 | 9 | 54329497 | 54331803 | 313 | 4.78 | 34357.78 | 2 | II |
| Sihdz46 | Seita.9G524200 | 9 | 55216547 | 55218989 | 335 | 6.07 | 36879.97 | 2 | II |
| Sihdz47 | Seita.9G572600 | 9 | 58368642 | 58376046 | 840 | 5.93 | 92167.29 | 17 | III |
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