Abundant Small Genetic Alterations after Upland Cotton Domestication

Table 1

Genetic divergence between G. hirsutum var. yucatanense and G. hirsutum acc. TM-1.

Category	Upstream	Exonic	Intronic	Downstream	Upstream/Downstream	Intergenic
SNP	149,469	132,271	283,859	123,958	7,742	5,931,601
InDel	43,047	3,952	51,547	32,258	2,066	589,730

Upstream: 1kb upstream region of a given gene; Downstream: 1kb downstream region of a given gene; Upstream/Downstream: 1kb upstream region of one gene, and meanwhile 1kb downstream region of another gene.