BioMed Research International / 2019 / Article / Tab 1 / Research Article
Development of Clustered Resistance Gene Analogs-Based Markers of Resistance to Phytophthora capsici in Chili Pepper Table 1 Information about the molecular markers within the extended major QTL region on chromosome 5.
Marker QTL Genome location (Mbp) Primer sequences References Forward primer (5′-3′) Reverse primer (5′-3′) U196349 HV Pc5.3 6.17 CCTGGGAGAGGAGTCCTACA GCAAGAAACAGCGCCTTTAG [40 ] U198114 HV Pc5.3 11.35 TTGGGCTCAATTAAACCATACA GCACCCCTTGATTGAGAGAA [40 ] CA_036100† EC Pc5.1 14.79 GTATATATTTATCAAAATTAATAATCTAGAGAGTATTGAGAGTGCTTAGTGAGAGAGATTAGCAAATTAGCAACAATGGGTAAATTGATTTTTGTAGCAAT [44 ] U197890 PY Pc5.3 14.93 CCATATGGTCCTCCTCCAGA CTTTCAACCACTTCGGCAAT [40 ] CONTIG1896 Phyto5 19.99 CATAACACAACCCAATTGCAGAACC GTCCTACACTTGTTACAGCTGCC [43 ] CA_028982† EC Pc5.1 20.02 GTGGAGGACGAATGTGGTATTTCTCAACCCCAACAAAGAGAAAAAAAACACGTAAAAATAATTTTGAGGAACTAAGGATAAGAAATGCAACAATGGAAGGC [44 ] CaNB-5390 20.2 AAGCCGGGTCTTATAAACTTCCAT CTTGTGAACATCCAAAGTTAGGGG In this study CaNB-5410 20.25 TAGAATCCATCAACCGTACGTAGA ATTGAGTTAGGTGGCATCTTGACT In this study CaNB-5440 20.3 GTTCGACGAGGCTCTACTTTGA TCAGTCTGCCAGGATTAACAATGA In this study CaNB-5480 20.51 TCGAAATCAATACTCCTCCTTCCC CTCACGCGTTGTTCTTAAAAGGTT In this study CAMS319 MC Pc5.1 20.57 CATAACACAACCCAATTGCAGAACC CATAACACAACCCAATTGCAGAACC [45 ] CaNB-5500 20.79 TCATTTATGCGTGCAGTATCGTAC AAATATACCCCTCAATGACACACA In this study CaNB-5720 22.5 GGAAGTCCATTTTATCTATCCTCAGA ATGATTTTGGGGGATTTCAATAGT In this study 907783 Phyto5 23.78 GACTCCATTTTCATGTTAGCGTGC CTTGCACCTGGTAAACAACGC [43 ] CaRP-5130 26.43 GACACATTTTGCAGATTCATCAAC CACCCAAAAAGGTAAAAAGAAACA In this study CONTIG1820 Phyto5 26.44 GCAAGGAGAAATCAACAGAGCC AATACAAAGAACGCAGTAGGAGGG [43 ] CaNB-5330 27.63 AAGAAAGCCGTCACCTTCATAGAT GCTAATTTGCAAGGATTACGCTCA In this study CaRK-5470 28.5 TTTCAATATCCAAAGAACACAACA GTGAACCCAATGTGATAGTGAAAG In this study Phyto5SAR Phyto5 29.29 GGCACAACAATAGTCACAACGG GAGACTAAGAAAGTTGGACGCC [43 ] CaNB-5530 30.19 GCTCCGTGTTCATCTATGTTAAACA AACAGAAGGATCCATCAGCATCAT In this study CAMS420 MC Pc5.1 32.04 CATAACACAACCCAATTGCAGAACC CATAACACAACCCAATTGCAGAACC [45 ] 142964 32.29 AAAGCTTTTTACATCTCATTCAACG AGTTTGAGCAACATAGATGTGGAG [42 ] CaNB-5170 34.56 TATCTCCTACATCCCACTGACAAC CTTGTCATGGGTGGTGCATTAATG In this study Sn-2 HV Pc5.2 47.72 TTCGATCCACACCATCATCT TCCTTCAATGGCTTTCCATC [40 ] P5-SNAP-CM CC Pc5.2 139.2 TCATGAGGTTGCTATTAAGATTGGTCCTGTTATATA CATAGAAAGGGATATCATCTGGTACATGCAGAAA [41 ]
Table
1 contains information about newly developed markers and several representative markers among the 31 previously developed markers.
† Primers for CA_036100 and CA_028982 are flanking sequences of CM334.