Development of Clustered Resistance Gene Analogs-Based Markers of Resistance to Phytophthora capsici in Chili Pepper

Table 3

The genotypes of the major QTL for P. capsici resistance linked SNP markers.

Group	Code^†	Marker
		CaNB-5480	CaNB-5500	CaRP-5130	CaNB-5330	Phyto5SAR	CaNB-5530
Group 1	R1	R	R	R	R	R	R
	R2	H	H	H	H	H	H
	R3	R	R	R	H	H	R
	R4	H	H	H	H	H	H
	R5	H	H	H	H	H	H
	R6	H	H	H	H	H	H
	R7	H	H	H	H	H	H
	R8	H	H	H	H	H	H
	R9	H	H	H	H	H	H
	R10	H	H	H	H	H	H
	R11	R	R	H	H	H	H
	R12	R	R	H	H	H	H
	R13	R	R	H	H	H	H
	R14	R	R	R	H	H	H
	R15	R	R	R	H	H	H
	R16	R	R	R	H	H	R
	R17	R	R	R	H	R	H
	R18	R	R	H	H	H	H
	R19	R	R	R	H	H	H
	R20	R	R	R	R	R	R
	R21	H	H	H	H	H	H
	R22	H	H	H	H	H	H
	R23	R	R	R	H	H	H
	R24	R	R	R	H	R	R
	R25	H	H	H	H	H	H
	R26	R	R	R	R	R	R
	R27	R	R	H	H	H	H
	R28	H	H	H	H	H	H
	R29	H	H	H	H	H	H
	R30	R	R	H	H	H	H
	MR1	H	H	H	H	H	H
	MR2	R	R	H	H	H	H
	MR3	R	R	H	H	H	H
Group 2	S1	S	S	S	S	S	S
	S2	S	S	S	S	S	S
	S3	S	S	S	S	S	S
	S4	S	S	S	S	S	S
Group 3	R31	H	H	H	H	-	H
	R32	H	H	H	R	S	S
	R33	R	R	H	R	S	S
	R34	H	H	H	S	H	H
	R35	H	H	-	R	S	H
	R36	H	H	S	H	S	S
	R37	H	H	S	R	S	S
	R38	R	S	R	S	R	R
	R39	S	R	H	H	H	S
	R40	S	S	H	H	H	H
	R41	S	S	R	S	R	R
	R42	S	S	R	S	H	R
	R43	S	S	H	S	S	S
	R44	S	S	S	R	R	R
Group 4	S5	S	S	S	R	S	S
	S6	S	S	R	S	S	R
	S7	S	S	R	S	S	R
	S8	S	S	R	S	S	R
	S9	S	S	R	H	S	S
	S10	S	S	R	H	S	H
	S11	S	H	S	H	S	S
	S12	S	H	R	H	S	R
	S13	R	R	S	S	S	S
	S14	H	H	-	S	S	S

Cosegregation genotypes are indicated by ; indicates recombinant genotypes. R: resistant homozygote, H: resistant heterozygote, S: susceptible homozygote, -: not detected. Group 1: genotypes matched with R phenotypes in resistant and moderately resistant cultivars, Group 2: genotypes matched with S phenotypes in susceptible cultivars, Group 3: a group of resistant cultivars with low genotyping accuracy, and Group 4: a group of susceptible cultivars with low genotyping accuracy. ^†Accession name is shown on Table S1.