Association Study of the Caspase Gene Family and Psoriasis Vulgaris Susceptibility in Northeastern China
Table 8
Haplotype analysis of SNPs on the same chromosome for samples under 40 years old.
chr
SNP
Haplotype
Ca-freq
N-Ca ( 439)
Co-freq
N-Co (216)
P
1
rs4233532
CC
0.545
239.255
0.051
11.016
0.00000
rs1052576
CT
0.401
176.039
0.338
73.008
TC
0.054
23.706
0.611
131.976
11
rs506601
ACCCG
0.042
18.438
0.019
4.104
0.00098
rs547584
ACCTA
0.119
52.241
0.105
22.68
rs672016
ACGTA
0.035
15.365
0.024
5.184
ATCCA
0
0
0.019
4.104
rs507879
ATCCG
0.027
11.853
0.058
12.528
rs2282659
ATCTA
0.309
135.651
0.224
48.384
ATCTG
0.015
6.585
0.038
8.208
ATGCG
0.053
23.267
0.043
9.288
ATGTA
0.117
51.363
0.172
37.152
TTCCG
0.026
11.414
0.054
11.664
TTCTA
0.227
99.653
0.229
49.464
TTCTG
0.018
7.902
0
0
TTGTA
0.012
5.268
0.015
3.24
10
rs17090911
AC
0.094
41.266
0.102
22.032
0.08798
rs2227310
GC
0.436
191.404
0.518
111.888
GG
0.47
206.33
0.38
82.08
2
rs12613347
CACT
0
0
0.015
3.24
0.00000
rs13006529
CATT
0.176
77.264
0.187
40.392
rs6704688
CTCC
0
0
0.161
34.776
rs2293554
CTCG
0.198
86.922
0
0
CTCT
0.289
126.871
0.294
63.504
CTTT
0
0
0.028
6.048
TTCC
0
0
0.073
15.768
TTCG
0.075
32.925
0
0
TTCT
0.262
115.018
0.226
48.816
TTTT
0
0
0.016
3.456
4
rs2705897
CGC
0.176
77.264
0.107
23.112
0.00001
rs4647610
CGT
0
0
0.011
2.376
rs5030545
CTC
0.183
80.337
0.182
39.312
CTT
0.533
233.987
0.644
139.104
TGC
0
0
0.02
4.32
TTC
0.014
6.146
0.016
3.456
TTT
0.094
41.266
0.02
4.32
Chr, Chromosome; SNP, single nucleotide polymorphism; N-Ca, number of case group; Ca-freq, case group frequencies; N-Co, Number of control group; Co-freq, control group frequencies; P, p value.