|
| Published article | Dataset accession number;
platform | Clinical setting | Cell type | Patient group | Control group | Microbiological cause | Infection source | Sampling time |
|
| Wong HR, et al (2007, 2012) [7, 8]; Cvijanovich N, et al (2008) [9] | GSE4607;
GPL570 | PICU | Whole blood | Septic shock(n=42) | Outpatients or inpatients without infective pathology(n=15) | S. aureus(n=9);
E. coli(n=3) | Lung, blood, urinary tract, colitis, CNS, abdominal, soft tissue, unknown | 1-3 days |
| Smith CL, et al (2014) [10]; Dickinson P (2015) [11] | GSE25504;
GPL6947 | Neonatal unit | Whole blood | Sepsis(n=26) | Inpatients without infective pathology(n=35) | S. aureus(n=18); E. coli(n=1) | Lung, CNS, urinary tract, abdominal, soft tissue, unspecified | Within 6 hours |
| Ahn SH, et al (2013) [12] | GSE33341;
GPL571 | Adult inpatient | Whole blood | Sepsis with positive blood cultures(n=51) | Healthy volunteers(n=43) | S. aureus(n=32); E. coli(n=19) | Lung, urinary tract, endocarditis, skin, catheter, bone, CNS, unknown | 1day |
| Dix A, et al (2015) [13] | GSE65088;
GPL10558 | none | Whole blood | Anti-coagulated blood of healthy human donors was incubated with bacteria or fungi(n=36) | Anti-coagulated blood of healthy human donors was incubated with mock-infected control(n=20) | S. aureus(n=3);
E. coli(n=4) | blood | 8 hours |
|
