Molecular Evolution and Functional Analysis of Rubredoxin-Like Proteins in Plants

Table 1

Detected motifs of 66 rubredoxin-like proteins in plant with MEME tool.

motif	Nsites	Width	E-value	motif regular expression
1	65	49	3.1e-3001	NAA[KR]AGLK[SA]GDQVLYTSSFFGDELWPADKLGFTKTAIQ AKPDSVYFVVS
2	65	53	9.4e-3171	THICLDCG[YF]IY[TF]L[PQ]K[PS]F[DE]EQPDTY[VGA]CPQC [INR]APKKRFA[RK]YDVNTG[KR][AP]IGGGLPP
3	66	29	1.2e-1561	GA[ED]VDVK[RK]LPKRPAPPRFGRKLT[ED][AT]QKAR
4	62	29	6.6e-1462	K[TN]IEVEVDKPLGLTLGQK[PQS]GGGVVIT[AG]V[ED]
5	62	21	1.2e-877	VI[IV]GL[VL]AG[IL][GA][AG]VGALLVYGLQ

: Nsites indicated how many sequences have the corresponding motif sites.
: width indicated how many amino acids in the predicted motif.
: E-value means the statistical significance of a motif, which is based on its log likelihood ratio, its width, and number of occurrences.