Identifying Protein Complexes from Dynamic Temporal Interval Protein-Protein Interaction Networks

Table 6

Distribution of the size of the exactly identified complexes.

Yeast expression data sets	Yeast PPI Data sets	Methods	The number of the exactly identified complexes													Total
			Size	2	3	4	5	6	7	8	9	10	12	14	15
GSE3431	STRING	ICJointLE-DPN		112	44	17	7	4	1	3	1	0	1	0	0	190
		Zhang’s method		53	19	9	5	2	1	2	0	0	1	0	0	92
		DPC-NADPIN		0	18	10	4	0	1	0	0	0	1	0	0	34
		TS-OCD		0	5	7	3	1	1	1	0	0	1	1	0	20
		DCA		0	4	3	0	0	0	0	0	0	0	0	0	7
	BioGrid	ICJointLE-DPN		113	42	15	6	4	0	1	2	1	1	0	0	185
		Zhang’s method		56	20	10	5	3	1	2	0	0	1	0	0	98
		DPC-NADPIN		0	20	11	4	1	1	1	0	0	1	0	0	39
		TS-OCD		0	19	7	4	4	2	3	0	0	1	0	1	41
		DCA		0	4	3	1	0	0	0	0	0	0	0	0	8
	DIP	ICJointLE-DPN		111	41	11	4	2	1	1	2	0	1	0	0	174
		Zhang’s method		65	17	7	2	1	1	1	0	0	0	0	0	94
		DPC-NADPIN		0	11	6	2	1	1	1	1	0	0	0	0	23
		TS-OCD		0	4	5	0	1	1	0	0	0	1	0	0	12
		DCA		0	3	5	1	0	0	0	0	0	0	0	0	9
GSE4987	STRING	ICJointLE-DPN		107	45	17	6	5	0	2	1	1	0	1	0	185
		Zhang’s method		52	21	12	4	3	2	2	0	0	0	0	1	97
		DPC-NADPIN		0	3	1	2	0	0	0	0	0	0	0	0	6
		TS-OCD		0	2	2	4	3	1	2	0	1	0	0	0	15
		DCA		0	2	2	1	1	0	0	0	0	0	0	0	6
	BioGrid	ICJointLE-DPN		111	46	16	4	4	0	1	3	2	0	0	0	187
		Zhang’s method		59	22	13	4	3	2	1	0	0	0	0	0	104
		DPC-NADPIN		0	4	2	2	0	0	0	0	0	0	0	0	8
		TS-OCD		0	16	7	5	5	2	2	0	1	0	1	0	39
		DCA		0	2	3	2	1	0	1	0	0	0	0	0	9
	DIP	ICJointLE-DPN		110	40	13	4	2	1	1	2	1	0	0	0	174
		Zhang’s method		69	20	8	3	3	2	1	0	0	0	0	0	106
		DPC-NADPIN		0	4	2	0	0	0	0	0	0	0	0	0	6
		TS-OCD		0	8	3	2	2	1	0	0	0	0	0	0	16
		DCA		0	5	3	2	1	0	0	0	0	0	0	0	11