GAAP: A Genome Assembly + Annotation Pipeline

Table 19

EVM execution command.

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EvmUtils/write_EVM_commands.pl - -genome genome.fasta - -weights weights.file

- -gene_predictions gene_predictions.gff3 - -protein_alignments protein_alignment.gff3

- -transcript_alignments transcript_alignment.gff3

- -output_file_name evm.out - -partitions partitions_list.out > commands.list

EvmUtils/execute_EVM_commands.pl commands.list

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