BioMed Research International / 2019 / Article / Tab 1

Research Article

Analysis of Synonymous Codon Usage Bias in Flaviviridae Virus

Table 1

The basic information of Flaviviridae.

Organism/NameAccession idENCGC12GC3GravyAromoCAI

Aedes flavivirusNC_012932.158.970.5020.5010.5241-0.0570.0800.682
Alkhurma hemorrhagic fever virusNC_004355.156.850.4510.5530.4625-0.7970.0620.715
Apoi virusNC_003676.154.490.4110.4970.4193-0.7510.0750.713
Bagaza virusNC_012534.154.460.4290.5080.5207-1.0060.0650.73
Banzi virusNC_029054.152.790.5180.5040.4394-0.1120.0820.74
Bouboui virusNC_033693.154.420.4230.4950.5486-0.8820.0730.722
Bussuquara virusNC_009026.254.190.4910.4990.4367-0.1510.0820.712
Cell fusing agent virusNC_001564.257.100.4260.5220.4365-0.5990.0780.683
Chaoyang virusNC_017086.156.190.4370.4950.4515-0.8940.0760.724
Culex flavivirusNC_008604.254.870.5820.5290.6034-0.0190.0950.702
Dengue virus 1NC_001477.152.150.4240.4760.4314-1.0160.0650.742
Dengue virus 2NC_001474.248.850.4210.4570.4587-0.2260.0770.701
Dengue virus 3NC_001475.249.430.4320.4640.468-0.2190.0780.696
Dengue virus 4NC_002640.150.900.4450.4700.4808-0.1880.0810.703
Donggang virusNC_016997.157.180.4400.5010.4526-0.7560.0970.714
Edge Hill virusNC_030289.153.610.4160.4910.4311-0.8060.0880.728
Entebbe bat virusNC_008718.155.040.4110.5160.4254-0.9050.0600.71
Gadgets Gully virusNC_033723.155.540.4430.5320.4574-0.8720.0680.735
Hanko virusNC_030401.155.430.4560.4650.4866-0.0210.1000.675
Ilheus virusNC_009028.256.120.4470.5350.4595-0.9680.0600.715
Japanese encephalitis virusNC_001437.155.490.5240.5160.5523-0.2090.0810.72
Jugra virusNC_033699.153.930.4210.4930.4343-0.8730.0690.718
Kadam virusNC_033724.156.450.4490.5390.4596-0.8510.0660.729
Kamiti River virusNC_005064.156.760.4070.5110.423-0.6660.0810.681
Karshi virusNC_006947.156.100.4440.5550.4546-0.8040.0640.717
Kedougou virusNC_012533.153.460.5830.5440.6084-0.1250.0810.74
Kokobera virusNC_009029.253.670.4980.4960.5271-0.1610.0830.711
Langat virusNC_003690.155.940.4540.5550.4622-0.8030.0540.723
Louping ill virusNC_001809.153.880.5800.5480.6059-0.1500.0800.736
Meaban virusNC_033721.156.710.4480.5560.4639-0.8940.0690.721
Mercadeo virusNC_027819.156.500.5490.5060.5734-0.0590.1010.699
Modoc virusNC_003635.151.610.3910.4670.4469-0.7010.0920.727
Montana myotis leukoencephalitis virusNC_004119.149.630.3720.4390.4083-0.1270.0900.694
Mosquito flavivirusNC_021069.156.520.4120.5340.4148-0.6670.0660.673
Murray Valley encephalitis virusNC_000943.154.420.4340.4980.4245-0.9250.0860.734
New Mapoon virusNC_032088.156.420.4450.5300.4431-0.9830.0670.714
Nounane virusNC_033715.154.510.4960.4970.5306-0.1380.0880.71
Ntaya virusNC_018705.353.720.4270.4930.4402-0.9040.0700.728
Ochlerotatus caspius flavivirusNC_034242.156.550.4050.4830.4159-0.6120.0920.696
Omsk hemorrhagic fever virusNC_005062.156.130.4430.5450.4534-0.8880.0610.72
Palm Creek virusNC_033694.154.980.4980.4950.52670.0080.0950.682
Paraiso Escondido virusNC_027999.154.680.4230.4870.4398-0.8040.0820.723
Parramatta River virusNC_027817.156.730.4090.4850.4202-0.6460.0930.693
Phnom Penh bat virusNC_034007.152.490.4050.4610.4168-0.6380.1060.72
Powassan virusNC_003687.155.720.4420.5450.4515-0.7990.0610.718
Quang Binh virusNC_012671.156.380.5640.5230.4369-0.0080.0940.698
Rio Bravo virusNC_003675.150.000.3640.4320.4070-0.1170.0950.689
Saboya virusNC_033697.154.450.4260.4920.4370-0.8320.0770.724
Saumarez Reef virusNC_033726.156.150.4500.5480.4641-0.9190.0710.728
Sepik virusNC_008719.154.340.4120.4830.4262-0.8110.0830.717
Spanish goat encephalitis virusNC_027709.155.920.4490.5590.4575-0.8620.0600.724
Spondweni virusNC_029055.156.950.4440.5320.4526-0.9380.0580.715
St. Louis encephalitis virusNC_007580.253.850.4280.5070.4395-0.9880.0670.727
Tamana bat virusNC_003996.148.750.3450.4020.3560-0.6740.1260.704
Tembusu virusNC_015843.254.690.4340.5030.4469-0.8940.0780.727
Tick-borne encephalitis virusNC_001672.155.790.4480.5520.4560-0.7770.0640.722
Uganda S virusNC_033698.152.780.4300.4690.4643-0.1110.0850.701
Usutu virusNC_006551.155.130.5160.5110.5428-0.1650.0830.721
Wesselsbron virusNC_012735.154.890.4150.4870.4303-0.8010.0860.717
West Nile virus 1NC_009942.156.150.4380.5220.5509-0.9730.0610.714
West Nile virus 2NC_001563.254.620.5220.5100.4432-0.1500.0830.729
Yaounde virusNC_034018.152.500.5140.5050.5447-0.1600.0830.721
Yellow fever virusNC_002031.154.540.4130.5090.4257-0.8220.0840.731
Yokose virusNC_005039.154.330.4030.4830.4151-0.8750.0730.718
Zika virusNC_012532.154.210.4390.5200.4495-0.9040.0630.728

We are committed to sharing findings related to COVID-19 as quickly and safely as possible. Any author submitting a COVID-19 paper should notify us at help@hindawi.com to ensure their research is fast-tracked and made available on a preprint server as soon as possible. We will be providing unlimited waivers of publication charges for accepted articles related to COVID-19. Sign up here as a reviewer to help fast-track new submissions.