BioMed Research International / 2019 / Article / Tab 2

Research Article

Analysis of Synonymous Codon Usage Bias in Flaviviridae Virus

Table 2

Nucleotide contents in ORFs of 66 Flaviviridae virus genomes.

virus strainAUGCGC

Aedes flavivirus0.25280.24670.26210.23840.29910.29940.2790.34120.501
Alkhurma virus0.24360.21570.3710.22370.29760.36170.27730.27290.553
Apoi virus0.27630.27540.27540.20750.33670.39060.24410.27220.497
Bagaza virus0.29160.21250.29290.21290.33070.37270.25010.28930.508
Banzi virus0.27270.22320.28160.22250.30890.27310.30450.3380.504
Bouboui virus0.28890.22970.26980.21160.33510.37850.24520.28670.495
Bussuquara virus0.28420.21740.283O0.21550.36010.25760.30670.30660.499
Cell fusing agent virus0.24430.24590.27440.23550.31150.37960.24070.28430.522
Chaoyang virus0.29010.2250.27040.21260.330.37040.24910.30710.495
Culex flavivirus0.23490.23570.29730.23210.25010.25450.3970.33280.529
Dengue virus 10.31910.21420.260.20870.35470.36520.2340.30450.476
Dengue virus 20.33170.21110.25290.20430.47140.23340.24510.28710.457
Dengue virus 30.32190.21410.25860.20530.44620.24570.26930.27630.464
Dengue virus 40.31050.22010.26310.20630.42490.24730.27570.28250.47
Donggang virus0.27070.2450.27190.21240.31520.37690.25110.30510.501
Edge Hill virus0.28470.23890.28420.19210.32880.39930.24820.28220.491
Entebbe bat virus0.27830.21590.28060.22520.34730.3830.23520.2790.516
Gadgets Gully virus0.26240.21660.3130.20790.29860.37710.27430.27570.532
Hanko virus0.26910.26570.26320.20190.33050.33140.30910.27260.465
Ilheus virus0.26890.20820.27970.24320.32310.35870.24620.30970.535
Japanese encephalitis ORF0.27760.20820.28360.23060.33420.24010.29890.34890.516
Jugra virus0.29010.22820.26980.21190.33280.38430.23820.29150.493
Kadam virus0.25470.220.31070.21560.30570.36680.2860.27330.539
Kamiti River virus0.25140.24870.26590.2340.32140.39840.23250.27170.511
Karshi virus,0.24310.21350.32110.22220.30260.37020.27230.27390.555
Kedougou virus0.24310.21350.32110.22220.25870.24010.39280.32610.544
Kokobera virus0.28130.22520.28920.210.34920.25860.31730.30490.496
Langat virus0.24470.2120.32310.22020.28970.37060.28120.27730.555
Louping ill virus0.24470.20720.32130.22670.26950.23190.37660.33140.548
Meaban virus0.24440.21360.33080.21120.30050.37150.29270.26320.556
Mercadeo virus0.25060.24370.27580.22990.27080.27930.34490.34980.506
Modoc virus0.29620.25160.27130.18090.35020.41550.22850.27410.467
Montana myotis leukoencephalitis virus0.29810.26340.26020.17830.38490.38090.25580.21810.439
Mosquito flavivirus0.23840.23950.27810.24350.31860.3850.23110.27080.534
Murray Valley encephalitis virus0.28880.230.27480.21140.33190.37630.24760.30410.498
New Mapoon virus0.26350.22130.27060.24460.31340.3650.25490.29540.53
Nounane virus0.28560.2170.27250.22450.3670.24740.28750.33150.497
Ntaya virus0.28560.2170.27250.22450.33260.37880.25030.29140.493
Ochlerotatus caspius flavivirus0.26880.25880.26650.20590.33540.40170.23260.27970.483
Omsk hemorrhagic fever virus0.25660.20820.31270.22240.30580.36680.27230.27060.545
Palm Creek virus i0.26360.24110.28780.20750.3440.2630.35880.26860.495
Paraiso Escondido virus0.28960.23550.28990.18510.32860.39040.25790.28470.487
Parramatta River virus0.26710.25950.26420.20930.33590.39380.23290.28160.485
Phnom Penh bat virus0.28710.26630.27160.17480.33840.41360.25930.26640.461
Powassan virus0.25160.21570.31280.21980.30520.3690.27530.26850.545
Quang Binh virus0.23880.23850.27760.24510.26150.26450.33210.36810.523
Rio Bravo virus0.30250.26560.25020.18170.40230.37980.22830.23630.432
Saboya virus0.2850.23850.27060.20590.32850.38720.24490.29440.492
Saumarez Reef virus0.25110.2150.31730.21660.29730.3740.29590.2670.548
Sepik virus0.28990.23860.26380.20770.34070.39310.2370.28770.483
Spanish goat encephalitis virus0.24420.20810.32330.22440.29820.36670.27760.2730.559
Spondweni virus0.24420.20810.32330.22440.31830.36310.24830.30240.532
St. Louis encephalitis virus0.29180.21160.28010.21650.33990.37210.24710.2930.507
Tamana bat virus0.33120.28390.21560.16920.42080.42850.19010.26180.402
Tembusu virus0.28660.22380.28940.20020.33040.37170.25670.29090.503
Tick-borne encephalitis virus0.2470.2120.32070.22020.30130.36680.27430.27650.552
Uganda S virus0.2470.210.32070.22020.38020.31140.25940.27950.469
Usutu virus0.27070.21920.28190.22810.31170.26990.30120.33680.511
Wesselsbron virus0.28560.23950.26650.20850.34060.39060.23450.29260.487
West Nile virus lineage 10.27240.21550.28830.22380.32610.3690.25520.29230.522
West Nile virus lineage 20.27270.217O0.28270.22750.31410.26350.3070.34170.51
Yaounde virus0.28840.20680.28490.21990.37120.21880.31920.32270.505
Yellow fever virus0.27040.23260.2860.21090.33360.39690.23860.28390.509
Yokose virus0.30030.22980.25970.21030.3540.38870.22340.28390.483
Zika virus0.27770.21460.29080.21690.31920.37040.25320.29520.52
average value0.27320.22880.28490.214790.33100.34400.27050.29240.5052
SD0.02360.01920.025320.01630.040520.05880.04100.027490.03233

We are committed to sharing findings related to COVID-19 as quickly and safely as possible. Any author submitting a COVID-19 paper should notify us at help@hindawi.com to ensure their research is fast-tracked and made available on a preprint server as soon as possible. We will be providing unlimited waivers of publication charges for accepted articles related to COVID-19. Sign up here as a reviewer to help fast-track new submissions.