BioMed Research International / 2019 / Article / Tab 3

Research Article

Analysis of Synonymous Codon Usage Bias in Flaviviridae Virus

Table 3

Optimal codons.

 PheLeuIleValAlaThrProSerTyrTERHisGlnAsnLysAspGluCysARGGLY

AEDES1.271.641.261.391.201.231.301.041.450.581.191.321.181.421.101.261.291.921.13
Alkhurma virus1.261.631.251.341.561.341.440.771.260.691.161.131.111.051.001.051.132.071.22
Apoi virus1.111.491.701.481.351.431.671.161.280.511.151.391.081.191.161.201.331.661.46
Bagaza virus1.131.891.411.371.521.491.260.811.210.561.161.131.131.131.241.401.372.441.71
Banzi virus1.041.921.511.561.281.641.641.461.093.001.121.351.241.041.051.021.202.011.35
Bouboui virus1.311.501.291.471.581.291.461.121.330.731.111.291.101.151.281.171.172.331.96
Bussuquara virus1.121.691.171.701.291.461.491.541.013.001.081.031.061.121.191.181.061.341.38
Cell fusing agent virus1.231.741.291.501.261.241.431.411.160.691.231.181.071.671.111.361.161.681.35
Chaoyang virus1.241.581.271.361.431.191.480.901.190.601.141.241.121.271.081.301.081.341.83
Culex flavivirus1.191.711.491.971.411.331.251.311.513.001.341.171.351.391.301.071.042.221.50
Dengue virus 11.251.651.191.661.951.351.571.001.460.461.041.261.091.281.111.321.093.352.29
Dengue virus 21.101.321.161.681.632.052.362.001.193.001.161.221.091.251.191.371.093.262.01
Dengue virus 31.241.341.141.731.351.831.852.071.003.001.001.051.221.241.121.261.083.082.06
Dengue virus 41.321.411.251.461.231.091.381.491.401.771.271.461.111.091.121.301.011.531.25
Donggang virus1.301.731.361.581.751.241.481.801.031.871.241.341.281.011.111.041.312.061.13
Edge Hill virus1.091.811.461.661.541.381.532.141.032.071.191.241.041.201.591.451.011.591.50
Entebbe bat virus1.091.491.501.451.751.351.412.001.150.541.151.101.121.041.111.031.181.901.19
Gadgets Gully virus1.092.151.231.471.471.111.841.751.023.001.211.041.041.061.021.221.251.801.93
Hanko virus1.251.701.161.381.271.471.411.171.162.201.141.451.091.101.051.271.021.331.37
Ilheus virus1.041.681.261.631.221.231.291.361.272.331.011.081.221.081.241.141.062.071.80
Japaneseencephalitisorf1.071.671.341.651.801.151.701.161.212.081.161.421.071.261.251.181.172.031.29
Jugra virus1.141.681.591.481.331.311.541.301.222.171.231.031.001.001.031.161.111.671.11
Kadam virus1.241.781.441.331.371.231.291.371.362.001.281.271.011.421.191.361.311.411.65
Kamiti River virus1.171.731.681.451.531.441.261.071.572.381.241.061.061.041.061.151.111.471.12
Karshi virus,1.021.991.362.281.261.461.301.271.123.001.021.381.091.311.331.301.082.141.50
Kedougou virus1.011.741.041.921.331.271.611.511.123.001.191.051.141.101.261.221.142.481.91
Kokobera virus1.131.611.221.641.551.301.671.751.172.211.161.071.051.041.141.011.181.971.12
Langat virus1.122.271.362.001.161.291.451.481.413.001.241.261.321.191.211.321.001.721.49
Louping ill virus1.131.771.341.531.421.261.571.811.292.021.201.031.081.101.001.071.241.511.16
Meaban virus1.121.461.501.391.161.211.211.261.243.001.271.071.431.061.061.091.171.101.96
Mercadeo virus1.171.471.471.811.851.371.551.831.011.841.241.321.091.141.251.351.282.491.28
Modoc virus1.361.771.371.551.691.521.941.831.093.001.321.091.211.141.241.401.322.981.73
Montana myotis leukoencephalitis virus1.051.911.331.671.541.301.291.281.232.011.131.421.051.411.221.511.091.491.36
Mosquito flavivirus1.291.831.451.401.651.371.352.171.052.131.081.111.101.191.101.301.071.891.40
Murray Valley encephalitis virus1.021.541.331.191.661.261.871.881.652.001.191.241.011.251.031.151.131.641.50
New Mapoon virus1.211.751.191.701.171.371.572.321.283.001.151.171.341.051.331.191.101.821.50
Nounane virus1.471.641.391.601.571.181.322.131.272.021.111.131.091.321.171.251.101.951.53
Ntaya virus1.261.711.301.561.331.301.441.531.282.041.191.561.071.071.271.361.241.441.48
Ochlerotatus caspius flavivirus1.201.611.231.481.801.401.631.741.002.171.161.071.021.161.041.021.151.851.14
Omsk hemorrhagic fever virus1.052.041.051.941.281.521.791.501.023.001.231.051.221.081.011.021.221.332.28
Palm Creek virus1.261.661.471.761.221.341.421.921.491.981.361.141.111.231.211.181.101.781.31
Paraiso Escondido virus1.321.851.291.761.081.121.351.481.331.991.211.571.121.411.151.531.141.401.26
Parramatta River virus1.181.631.641.571.811.551.211.781.141.841.011.301.161.031.311.261.282.311.29
Phnom Penh bat virus1.221.811.241.371.721.311.261.791.002.171.181.031.081.131.071.091.272.061.15
Powassan virus1.191.581.721.421.411.351.091.171.413.001.361.061.321.181.221.041.041.521.66
Quang Binh virus1.091.601.351.471.811.451.892.031.163.001.341.261.101.311.291.311.362.752.20
Rio Bravo virus1.221.701.331.301.451.301.561.581.301.871.261.341.021.231.101.091.152.131.19
Saboya virus strain1.161.771.191.511.491.451.461.571.232.031.271.031.031.131.111.101.271.751.27
Saumarez Reef virus1.181.731.301.621.581.251.391.671.031.961.311.441.111.231.061.271.132.261.21
Sepik virus1.381.701.081.421.711.471.381.591.102.251.051.061.021.151.041.011.171.171.12
Spanish goat encephalitis virus1.121.531.201.391.681.281.451.821.232.381.141.161.191.351.131.191.111.411.23
Spondweni virus1.251.931.571.421.511.421.492.251.082.251.151.261.061.261.181.351.141.791.36
St. Louis encephalitis virus1.301.421.801.591.451.781.631.961.011.551.291.621.271.331.261.421.433.071.35
Tamana bat virus1.361.741.521.331.551.431.291.871.131.791.331.101.011.321.021.131.221.921.18
Tembusu virus1.191.741.551.381.661.381.381.681.112.341.101.011.011.091.011.031.172.011.10
Tick-borne encephalitis virus1.111.511.161.471.361.062.252.071.141.141.191.261.071.171.051.151.122.441.70
Uganda S virus1.031.741.211.431.251.401.591.381.171.501.261.151.221.111.211.091.002.251.73
Usutu virus1.111.601.451.551.591.321.321.681.162.021.221.321.321.321.131.301.042.161.30
Wesselsbron virus1.231.551.571.471.701.321.461.711.022.351.001.141.101.241.281.271.121.691.27
West Nile virus lineage 11.081.811.421.671.371.261.621.521.263.001.251.101.101.081.121.051.162.012.03
West Nile virus lineage 21.131.771.502.032.031.491.491.701.223.001.181.091.291.041.231.261.162.182.30
Yaounde virus1.131.561.271.441.641.291.621.821.202.281.281.161.181.201.141.271.161.871.37
Yellow fever virus1.311.571.441.751.401.251.501.791.282.031.151.331.001.311.101.411.172.011.37
Yokose virus1.021.621.241.561.611.461.481.841.232.021.211.211.031.141.101.131.092.001.38
Zika virus1.081.421.221.291.621.071.321.131.003.001.051.231.161.231.331.071.041.191.57

Ration of A/U-ended codons(%)84.6261.4576.9263.0784.6281.5498.4676.9269.2384.6287.6973.8546.1578.4664.6183.8278.4683.0793.85

We are committed to sharing findings related to COVID-19 as quickly and safely as possible. Any author submitting a COVID-19 paper should notify us at help@hindawi.com to ensure their research is fast-tracked and made available on a preprint server as soon as possible. We will be providing unlimited waivers of publication charges for accepted articles related to COVID-19. Sign up here as a reviewer to help fast-track new submissions.