Research Article
An Approach to Identify Individual Functional Single Nucleotide Polymorphisms and Isoform MicroRNAs
Table 3
Identification of isomiRs using matpred2 and validation using miRNA sequencing data.
| | Sits | Name | Mature miRNA | Number | Mature miRNA | Number | Mature miRNA | Number |
| | P5_5 | >hsa-mir-1273h | CCTGGGAGGTCAAGGCTGTAGT | 1 | GCCTGGGAGGTCAAGGCTGTAG | 1 | ATTGCTTGAGCCTGGGAGGTCA | 11 | | P5_5 | >hsa-mir-1273h | TTGAGCCTGGGAGGTCAAGGCT | 24 | | | | | | P5_3 | >hsa-mir-1273d | GAGGTTGAGGCTGCAGTGAGCC | 10 | | | | | | P5_3 | >hsa-mir-1273d | GAGGTTGAGGCTGCAGTGAGCC | 10 | TGAGGTTGAGGCTGCAGTGAGC | 1 | | | | P5_3 | >hsa-mir-564 | TCAGCAGGCAACATGGCCGAGA | 1 | TGTCAGCAGGCAACATGGCCGA | 1 | GTCAGCAGGCAACATGGCCGAG | 1 | | P5_3 | >hsa-mir-564 | GTGTCAGCAGGCAACATGGCCG | 1 | | | | | | P5_3 | >hsa-mir-663a | TCCCAGGCGGGGCGCCGCGGGA | 2 | TCCGGCGTCCCAGGCGGGGCGC | 3 | | | | P5_3 | >hsa-mir-635 | TGAAACAATGTCCATTAGGCTT | 1 | GAAACAATGTCCATTAGGCTTT | 1 | ACAATGTCCATTAGGCTTTGTT | 1 | | P5_3 | >hsa-mir-635 | AACAATGTCCATTAGGCTTTGT | 1 | CTGAAACAATGTCCATTAGGCT | 1 | | | | P5_3 | >hsa-mir-1254-2 | TGGAAGCTGGAGCCTGCAGTGA | 1 | TGAGCCTGGAAGCTGGAGCCTG | 1 | GCCTGGAAGCTGGAGCCTGCAG | 1 | | P5_3 | >hsa-mir-1273h | TGAGCCTGGGAGGTCAAGGCTG | 5 | TTGAGCCTGGGAGGTCAAGGCT | 4 | TGCTTGAGCCTGGGAGGTCAAG | 4 | | P5_3 | >hsa-mir-1273h | TTGCTTGAGCCTGGGAGGTCAA | 2 | | | | | | P3_5 | >hsa-mir-320e | GAAAAGCTGGGTTGAGAAGGT | 1 | AAAAGCTGGGTTGAGAAGGT | 1 | GGAAAAGCTGGGTTGAGAAGGT | 1 | | P3_3 | >hsa-mir-3615 | CTCTCTCGGCTCCTCGCGGCTC | 1 | GGCTCCTCGCGGCTCGCGGCGG | 1 | CGGCTCCTCGCGGCTCGCGGCG | 1 | | P3_3 | >hsa-mir-3615 | TCGGCTCCTCGCGGCTCGCGGC | 1 | | | | | | P3_3 | >hsa-mir-1303 | TAGAGACGGGGTCTTGCTCTGT | 1 | | | | | | P3_3 | >hsa-mir-1303 | GGGTCTTGCTCTGTTGCCAGGC | 1 | | | | | | P3_3 | >hsa-mir-1303 | TAGAGACGGGGTCTTGCTCTGT | 1 | ACGGGGTCTTGCTCTGTTGCCA | 1 | | |
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