Handling Big Data Scalability in Biological Domain Using Parallel and Distributed Processing: A Case of Three Biological Semantic Similarity Measures

Table 15

Average time obtained using a distributed system (2, 3, and 4 slaves) with Enhanced SSDD and input data divided by their similarity.

Number of Gene Pairs	Original SSDD Average Time (ns)	Threaded SSDD Average Time (ns) (Input Data Divided by Their Similarity)			% Threaded SSDD Average Time (Input Data Divided by Their Similarity) vs. Original SSDD Average Time
		2 Slaves	3 Slaves	4 Slaves	2 Slaves	3 Slaves	4 Slaves
10	2.92E+08	1.24E+08	8.63E+10	1.17E+11	-57.55	29444.68	39954.78
100	1.32E+08	5.72E+07	1.04E+10	1.06E+10	-56.58	7794.49	7946.31
1000	9.32E+07	4.55E+07	1.01E+09	1.08E+09	-51.16	984.15	1059.29
10000	4.62E+07	4.47E+07	9.67E+07	1.82E+08	-3.23	109.35	294.01
100000	4.48E+07	2.47E+07	6.66E+07	4.38E+07	-44.83	48.75	-2.17
1000000	2.83E+07	6.45E+07	6.42E+07	4.12E+07	128.07	127.01	45.68
Average	1.06E+08	6.01E+07	1.63E+10	2.15E+10	-1.42E+01	6.42E+03	8.22E+03