Pattern Matching for DNA Sequencing Data Using Multiple Bloom Filters

Table 8

Pattern searching time in seeq.

Pattern	Length	Chr 1		Chr 12		Chr 21
		Occurrences	Time (Secs)	Occurrences	Time (Secs)	Occurrences	Time (Secs)
TTTGAT	6	98196	1.624	59222	0.932	16169	0.258
CATCAT	6	77840	1.606	46203	0.902	12202	0.275
GTGTCTGT	8	8615	1.49	5035	0.856	1471	0.261
TGGAATGGGA	10	552	1.341	286	0.807	108	0.22
TTTTTTAGAAT	11	327	1.36	208	0.79	60	0.215
GAGGCAGGAGGATCCC	16	82	1.224	44	0.721	13	0.204