Research Article
Molecular Dynamics Simulations of A27S and K120A Mutated PTP1B Reveals Selective Binding of the Bidentate Inhibitor
Table 1
Binding free energies (kcal/mol) and the individual energetic terms for the systems of WT, A27S, and K120A using the MM-PBSA method.
| Energetic terms | WT | A27S | K120A |
| | -47.55 ± 0.27 | -43.26 ± 0.21 | -46.12 ± 0.21 | | -87.26 ± 0.19 | -82.48 ± 0.54 | -70.1 ± 0.22 | | 78.4 ± 0.23 | 75.38 ± 0.25 | 63.45 ± 0.19 | | -33.23 ± 0.09 | -31.73 ± 0.08 | -32.61 ± 0.12 | | 57.05 ± 0.08 | 55.07 ± 0.12 | 55.93 ± 0.09 | | 102.22 ± 0.26 | 98.72 ± 0.29 | 86.77 ± 0.24 | ΔH | -32.6 ± 0.22 | -27.03 ± 0.25 | -29.45 ± 0.27 | -ΔTS | 24.57 ± 0.39 | 22.16 ± 0.39 | 22.61 ± 0.4 | | -8.03 ± 0.32 | -4.86 ± 0.33 | -6.84 ± 0.34 | | −7.33 | −5.37 (TCPTP) |
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= + + . binding free energy was calculated by ≈ RT ln . |