Ammonia Exposure Induced Cilia Dysfunction of Nasal Mucosa in the Piglets

Table 1

Downregulated genes involved in cilium biogenesis and movement.

Ensembl gene ID	Gene name	Chromosome location	Fold change (FC)^a	padj^b
ENSSSCG00000011078	ARMC3	10	-8.19	1.25-05
ENSSSCG00000011069	ARMC4	10	-6.09	1.36-04
ENSSSCG00000002356	BBOF1	7	-6.67	0.001
ENSSSCG00000015795	CCDC110	15	-4.01	7.06-05
ENSSSCG00000002803	CCDC113	6	-4.36	0.011
ENSSSCG00000011291	CCDC13	13	-9.20	1.05-05
ENSSSCG00000015412	CCDC146	9	-4.45	0.002
ENSSSCG00000013626	CCDC151	2	-7.35	0.001
ENSSSCG00000015109	CCDC153	9	-7.35	0.001
ENSSSCG00000026564	CCDC169	11	-2.03	0.032
ENSSSCG00000015935	CCDC173	15	-4.38	2.61-06
ENSSSCG00000001908	CCDC33	7	-4.51	0.003
ENSSSCG00000011768	CCDC39	13	-2.24	0.001
ENSSSCG00000009842	CCDC60	14	-7.13	0.017
ENSSSCG00000000179	CCDC65	5	-2.83	0.002
ENSSSCG00000014917	CCDC81	9	-2.20	0.033
ENSSSCG00000028085	CCDC96	8	-5.12	0.002
ENSSSCG00000026849	CCNO	16	-3.11	0.002
ENSSSCG00000014979	CEP126	9	-2.87	3.44-05
ENSSSCG00000023957	CFAP126	4	-3.31	0.009
ENSSSCG00000001786	CFAP161	7	-6.06	0.001
ENSSSCG00000015741	CFAP221	15	-6.84	0.007
ENSSSCG00000010609	CFAP43	14	-5.89	0.003
ENSSSCG00000021271	CFAP44	13	-6.39	2.18-06
ENSSSCG00000017994	CFAP52	12	-5.71	0.003
ENSSSCG00000010298	CFAP70	14	-4.24	5.47-04
ENSSSCG00000030513	CFAP74	6	-3.88	0.018
ENSSSCG00000005727	CFAP77	1	-7.81	0.003
ENSSSCG00000016255	DAW1	15	-9.02	3.72-05
ENSSSCG00000001085	DCDC2	7	-11.22	1.54-05
ENSSSCG00000014943	DEUP1	9	-4.15	1.13-08
ENSSSCG00000002675	DNAAF1	6	-7.19	5.65-05
ENSSSCG00000028184	DNAH1	13	-6.99	0.037
ENSSSCG00000009765	DNAH10	14	-5.30	1.31-05
ENSSSCG00000015379	DNAH11	9	-3.76	2.80-05
ENSSSCG00000017963	DNAH2	12	-4.21	0.009
ENSSSCG00000024185	DNAI1	10	-6.70	0.002
ENSSSCG00000024357	DNAI2	12	-9.65	0.022
ENSSSCG00000014832	DNAJB13	9	-5.93	0.001
ENSSSCG00000022979	DNALI1	6	-7.17	2.61-04
ENSSSCG00000008568	DRC1	3	-5.50	6.06-04
ENSSSCG00000002817	DRC7	6	-5.28	0.003
ENSSSCG00000011587	EFCAB12	13	-6.10	4.47-05
ENSSSCG00000017794	EFCAB5	12	-2.61	0.048
ENSSSCG00000011205	EFHB	13	-11.99	0.016
ENSSSCG00000002620	EFHC1	7	-4.30	1.11-04
ENSSSCG00000017187	FOXJ1	12	-7.91	0.01
ENSSSCG00000009877	IQCD	14	-3.00	0.031
ENSSSCG00000011855	IQCG	13	-4.30	1.10-04
ENSSSCG00000016608	IQUB	18	-3.38	0.005
ENSSSCG00000015138	JHY	9	-6.51	0.002
ENSSSCG00000021571	KIF27	10	-3.46	6.42-04
ENSSSCG00000001594	KIF6	7	-7.91	0.033
ENSSSCG00000004469	LCA5	1	-3.39	0.005
ENSSSCG00000028122	LCA5L	13	-3.41	0.031
ENSSSCG00000016542	LRGUK	18	-5.18	0.002
ENSSSCG00000005952	LRRC6	4	-6.05	3.39-05
ENSSSCG00000001042	MAK	7	-3.50	0.002
ENSSSCG00000016974	MAP1B	16	-2.16	0.008
ENSSSCG00000011217	NEK10	13	-5.43	0.0001
ENSSSCG00000027997	NME5	2	-4.23	0.011
ENSSSCG00000006255	RP1	4	-7.48	0.0005
ENSSSCG00000006726	SPAG17	4	-8.63	3.11-05
ENSSSCG00000011080	SPAG6	10	-6.00	0.0006
ENSSSCG00000025842	SPAG8	1	-2.88	0.013
ENSSSCG00000016831	SPEF2	16	-2.88	0.066
ENSSSCG00000001067	STMND1	7	-10.29	0.001
ENSSSCG00000017884	TEKT1	12	-4.22	0.007
ENSSSCG00000003633	TEKT2	6	-8.94	2.31-06
ENSSSCG00000018028	TEKT3	12	-12.25	7.81-06
ENSSSCG00000022389	TPPP	16	-5.98	0.001
ENSSSCG00000017415	TTC25	12	-2.76	0.004
ENSSSCG00000011263	TTC21A	13	-3.57	0.002
ENSSSCG00000000982	TTLL8	5	-3.08	0.032
ENSSSCG00000007236	TTLL9	17	-9.69	7.28-04
ENSSSCG00000016216	TUBA4A	15	-6.17	3.17-05
ENSSSCG00000006950	WDR63	4	-2.72	0.021
ENSSSCG00000009802	WDR66	14	-5.93	0.002
ENSSSCG00000022305	WDR78	6	-5.42	1.52-04
ENSSSCG00000011408	ZMYND10	13	-6.57	3.24-06

^aDifference in gene expression between samples; -: indicates a downregulated expression. ^bThe value is corrected by multiple calibration.