A Comparison of Two DNA Metagenomic Bioinformatic Pipelines While Evaluating the Microbial Diversity in Feces of Tanzanian Small Holder Dairy Cattle

Table 3

Most abundant bacteria according to the two classification approaches.

Taxa	Kraken 2	MG-RAST	value
	(%)	(%)
Phyla
Proteobacteria			0.88
Firmicutes			0.88
Bacteroidetes			0.1
Actinobacteria			<0.001
Tenericutes			<0.001
Genus
Pseudomonas			0.97
Comamonas			<0.001
Acinetobacter			0.01
Janthinobacterium			0.42
Bacteroides			0.03
Acidovorax			<0.001
Stenotrophomonas			0.83
Clostridium			<0.001
Species
Pseudomonas fluorescens			<0.001
Comamonas testosterone			<0.001
Pseudomonas putida			0.02
Pseudomonas stutzeri			0.74
Escherichia coli			<0.001
Prevotella ruminicola			<0.001