Global Analysis of Alternative Splicing Difference in Peripheral Immune Organs between Tongcheng Pigs and Large White Pigs Artificially Infected with PRRSV In Vivo

Table 1

Alternative splicing events in the ILN and spleen of LW pigs and TC pigs.

Tissue	ASE type	LW-I			LW-C			TC-I			TC-C
		L1	L2	L3	L4	L5	L6	T1	T2	T3	T4	T5	T6
ILN	A3SS	109	95	103	90	92	91	120	120	111	115	121	102
	A5SS	46	42	40	40	36	38	52	43	45	46	42	40
	MXE	2375	2421	2374	2325	2299	2286	2251	2247	2250	2235	2230	2203
	RI	60	50	63	59	59	59	63	62	63	60	62	57
	SE	7600	8351	7663	6136	5446	5484	7406	6980	6686	6979	5934	4539
Spleen	A3SS	126	127	117	123	113	112	106	115	103	111	113	108
	A5SS	50	49	49	46	48	45	43	43	40	38	37	37
	MXE	2341	2326	2331	2313	2307	2306	1935	1979	1968	1949	1949	1966
	RI	61	58	64	66	61	60	58	60	56	55	58	57
	SE	7095	7863	7051	6014	5349	5658	5653	7273	6263	4986	5346	5933

L1-L6 represents different individuals from LW pigs; T1-T6 represents different individuals from TW pigs.