A Multiscale CNN-CRF Framework for Environmental Microorganism Image Segmentation

Table 5

The average indexes for each category of EM generated by U-Net, mU-Net-BXs. For short, in this table, mU-Net-B1, mU-Net-B2, and mU-Net-B3 are abbreviated as B1, B2, and B3, respectively.

EM	Methods	Evaluation metrics					EM	Methods	Evaluation metrics					EM	Methods	Evaluation metrics
		Dice	Jaccard	Recall	Accuracy	VOE			Dice	Jaccard	Recall	Accuracy	VOE			Dice	Jaccard	Recall	Accuracy	VOE
1	U-Net	71.8	57.47	59.13	97.53	42.53	8	U-Net	92.77	87.46	93.74	97.84	12.54	15	U-Net	93.06	87.23	91.36	97.38	12.77
	B1	71.3	56.76	59.19	97.41	43.24		B1	94.05	89.39	94.9	98.19	10.61		B1	92.96	87.26	92.26	97.46	12.74
	B2	72.04	57.77	59.46	97.56	42.23		B2	94.51	89.98	95.8	98.29	10.02		B2	93.71	88.3	92.12	97.72	11.7
	B3	72.16	57.86	59.52	97.57	42.14		B3	94.59	90	96.97	98.23	10		B3	93.12	87.25	91.62	97.49	12.75
2	U-Net	94.87	91.18	92.54	97.5	8.82	9	U-Net	86.57	80.98	83.51	97.55	19.02	16	U-Net	89.8	82.23	84.41	97.59	17.77
	B1	97.47	95.24	98.28	98.63	4.76		B1	88.99	82.23	88.72	97.11	17.77		B1	91.9	85.43	87.18	98.06	14.57
	B2	95.04	91.15	96.52	97.19	8.85		B2	92.04	86.17	89.02	98.15	13.83		B2	92.68	86.62	86.83	98.17	13.38
	B3	97.69	95.69	98.67	98.71	4.31		B3	89.38	82.49	90.88	97.01	17.51		B3	92.4	86.18	87.93	98.22	13.82
3	U-Net	94.06	88.86	92.19	99.7	11.14	10	U-Net	91.36	84.3	95.13	98.97	15.7	17	U-Net	89.28	83.16	94.22	97.95	16.84
	B1	93.02	87.09	93.11	99.62	12.91		B1	93.97	88.79	95.52	99.02	11.21		B1	86.76	79.87	95.46	97.84	20.13
	B2	94.25	89.25	93.44	99.71	10.75		B2	94.17	89.23	95.87	98.94	10.77		B2	85.77	79.15	95.18	97.48	20.85
	B3	94.3	89.38	92.82	99.71	10.62		B3	94.71	90.01	95.52	99.34	9.99		B3	84.94	78.99	95.22	96.79	21.01
4	U-Net	48.83	38.24	44.24	96.64	61.76	11	U-Net	88.48	82.47	83.7	92.27	17.53	18	U-Net	93.08	87.27	88.16	95.07	12.73
	B1	58.16	44.9	57.02	97.12	55.1		B1	96.51	93.41	95.31	97.19	6.59		B1	94.89	90.35	91.69	96.48	9.65
	B2	60.76	47.66	57.68	97.31	52.34		B2	96.1	92.63	94.67	96.91	7.37		B2	94.23	89.21	90.35	96.07	10.79
	B3	59.2	46.29	60.44	96.68	53.71		B3	92.08	86.35	87.49	93.95	13.65		B3	94.12	88.99	90.18	95.82	11.01
5	U-Net	87.46	78.83	91.19	97.25	21.17	12	U-Net	83.32	73.21	76.63	96.91	26.79	19	U-Net	91.56	85.2	85.43	98.37	14.8
	B1	86.38	77.74	95.2	98.09	22.26		B1	81.6	72.11	79.57	96.65	27.89		B1	93.63	88.37	88.66	98.72	11.63
	B2	85.44	77.88	94.72	97.9	22.12		B2	82.89	73.45	82.73	96.86	26.55		B2	93.37	87.68	87.95	98.41	12.32
	B3	82.28	72.93	91.74	97.22	27.07		B3	86.78	77.63	80.49	97.53	22.37		B3	90.97	84.36	85.12	97.99	15.64
6	U-Net	55.43	40.56	50.04	89	59.44	13	U-Net	88.76	80.63	84.5	97.25	19.37	20	U-Net	80.01	68.72	70.06	93.57	31.28
	B1	69.29	53.89	72.69	90.74	46.11		B1	92.23	85.8	91.6	98.02	14.2		B1	89.79	82.3	83.22	96.17	17.7
	B2	63.7	48.62	75.06	86.93	51.38		B2	87.19	79.86	91.13	95.22	20.14		B2	89.43	81.59	83.25	96.19	18.41
	B3	64.01	48.94	76.74	87.11	51.06		B3	89.87	83.24	92.61	96.44	16.76		B3	87.32	79.11	80.82	95.27	20.89
7	U-Net	90.11	82.93	93.82	98.41	17.07	14	U-Net	84.62	74.52	83.31	97.76	25.48	21	U-Net	94.86	90.32	90.49	97.52	9.68
	B1	88.53	80.59	97.21	97.99	19.41		B1	83.6	74.85	84.45	97.6	25.15		B1	94.71	90.08	90.93	97.43	9.92
	B2	90.33	82.99	96.66	98.44	17.01		B2	79.97	73.21	80.36	97.85	26.79		B2	95.38	91.26	92.02	97.8	8.74
	B3	88.96	81.04	98.21	98.16	18.96		B3	85.68	76.69	84.58	98.06	23.31		B3	95.24	91.01	91.91	97.73	8.99