A Novel Schizophrenia Diagnostic Model Based on Statistically Significant Changes in Gene Methylation in Specific Brain Regions

Table 4

DNA methylation sites in GSE89706 for constructing the SCZ diagnostic model.

Probe ID	Genomic position	Gene	Gene region	value	logFC
cg11676382	chr22:51142802–51143308	SHANK3	Body	0.031	–0.012
cg06304401		NLGN1	5′UTR	0.030	–0.007
cg19510409		NLGN1	Body	0.016	0.017
cg15078211	chr7:42267546–42267823	GLI3	5′UTR	0.011	–0.014
cg17390350	chr7:42267546–42267823	GLI3	5′UTR	0.002	–0.048
cg22411165		GLI3	Body	0.002	–0.020
cg10518481	chr19:5339640–5341061	PTPRS	TSS1500	0.002	0.026
cg04250837	chr1:231762414–231763115	TSNAX-DISC1	Body	0.041	0.019
cg07007152	chr7:155601175–155603235	SHH	Body	0.014	0.015
cg15244043	chr7:155604725–155605095	SHH	Body	0.007	0.011
cg20521696	chr7:155601175–155603235	SHH	Body	0.029	0.030

FC, fold change; TSS1500, transcription start site 1500; 5′UTR, 5′ untranslated region.