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First author (publication year) | Country/region | Dataset | Platform | Samples | Cancer | Nontumor |
N | Mean | SD | N | Mean | SD |
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Kim B et al. (2009) | South Korea | GEO:GSE14811 | KRIBB GLP8177 | Pair-matched HCC vs. adjacent liver tissues | 56 | -0.040 | 0.033 | 56 | 0.111 | 0.034 |
Ozturk M et al. (2009) | Turkey | GEO:GSE17548 | Affymetrix GPL570 | Cirrhosis liver vs HCC | 17 | 7.967 | 0.267 | 20 | 6.968 | 0.148 |
Archer KJ et al. (2009) | USA | GEO:GSE17967 | Affymetrix GPL571 | Cirrhosis liver with or without HCC | 16 | 6.477 | 0.179 | 47 | 5.768 | 0.094 |
Bonacci B et al. (2010) | USA | GEO:GSE22045 | Affymetrix GPL570 | Pair-matched HCC vs. adjacent liver tissues | 24 | 6.034 | 0.191 | 24 | 5.047 | 0.051 |
Zhang C et al. (2010) | USA | GEO:GSE25097 | Affymetrix GPL10687 | Cirrhotic and normal livers vs HCC | 268 | 2.818 | 0.109 | 289 | 0.788 | 0.024 |
Huang Y et al. (2011) | Taiwan | GEO:GSE33006 | Affymetrix GPL570 | Pair-matched HCC vs. adjacent liver tissues | 3 | 10.150 | 0.209 | 3 | 8.246 | 0.160 |
Lim HY et al. (2012) | South Korea | GEO:GSE36376 | Illumina GPL10558 | Pair-matched HCC vs. adjacent liver tissues | 240 | 7.576 | 0.040 | 193 | 6.806 | 0.016 |
Kim J et al. (2012) | USA | GEO:GSE39791 | Illumina GPL10558 | Pair-matched HCC vs. adjacent liver tissues | 72 | 7.636 | 0.055 | 72 | 7.106 | 0.028 |
Darpolor MM et al. (2013) | USA | GEO:GSE45050 | Affymetrix GPL6244 | Cirrhotic and normal livers vs HCC | 6 | 8.532 | 0.406 | 10 | 7.683 | 0.141 |
Wei L et al. (2013) | China | GEO:GSE45114 | CapitalBio GPL5918 | Normal vs. HCC and pericancer tissues | 24 | 1.341 | 0.226 | 25 | -0.086 | 0.171 |
Jeng Y et al. (2013) | Taiwan | GEO:GSE46408 | Agilent GPL4133 | Pair-matched HCC vs. adjacent liver tissues | 6 | 10.210 | 0.386 | 6 | 7.636 | 0.221 |
Chen X et al. (2013) | USA | GEO:GSE46444 | Illumina GPL13369 | Liver tissues vs. HCC from HCC patients | 88 | 7.478 | 0.106 | 48 | 7.961 | 0.139 |
Geffers R et al. (2013) | Germany | GEO:GSE50579 | Agilent GPL14550 | Liver cell and normal liver vs. HCC | 70 | 10.500 | 0.126 | 10 | 9.037 | 0.118 |
Villa E et al. (2014) | Italy | GEO:GSE54236 | Agilent GPL6480 | Pair-matched HCC vs. adjacent liver tissues | 81 | 7.534 | 0.119 | 80 | 6.689 | 0.077 |
Melis M et al. (2014) | USA | GEO:GSE55092 | Affymetrix GPL570 | Cirrhosis liver vs HCC | 49 | 7.016 | 0.119 | 91 | 6.132 | 0.034 |
Hoshida Y et al. (2014) | USA | GEO:GSE56140 | Illumina GPL18461 | Cirrhosis liver vs HCC | 35 | 8.806 | 0.106 | 34 | 7.991 | 0.044 |
Mah W et al. (2014) | Singapore | GEO:GSE57957 | Illumina GPL10558 | Pair-matched HCC vs. adjacent liver tissues | 39 | 9.173 | 0.123 | 39 | 8.410 | 0.067 |
Udali S et al. (2014) | Italy | GEO:GSE59259 | NimbleGen GPL18451 | Alcohol-cirrhosis liver vs HCC | 8 | 10.490 | 0.310 | 8 | 10.710 | 0.145 |
Kao KJ et al. (2014) | Taiwan | GEO:GSE60502 | Affymetrix GPL96 | Pair-matched HCC vs. adjacent liver tissues | 18 | 9.241 | 0.209 | 18 | 7.808 | 0.101 |
Zucman-Rossi J et al. (2014) | France | GEO:GSE62232 | Affymetrix GPL570 | Normal vs. HCC | 81 | 7.569 | 0.131 | 10 | 6.013 | 0.130 |
Makowska Z et al. (2014) | Switzerland | GEO:GSE64041 | Affymetrix GPL6244 | Normal vs. HCC | 60 | 7.589 | 0.111 | 65 | 6.796 | 0.043 |
Tao Y et al. (2015) | China | GEO:GSE74656 | Affymetrix GPL16043 | Pair-matched HCC vs. adjacent liver tissues | 10 | 6.990 | 0.278 | 5 | 5.727 | 0.173 |
Grinchuk OV et al. (2015) | Singapore | GEO:GSE76427 | Illumina GPL10558 | Pair-matched HCC vs. adjacent liver tissues | 115 | 8.656 | 0.064 | 52 | 8.009 | 0.065 |
Qin W et al. (2016) | China | GEO:GSE84402 | Affymetrix GPL570 | Pair-matched HCC vs. adjacent liver tissues | 14 | 6.801 | 0.312 | 14 | 5.086 | 0.247 |
Hui KM et al. (2018) | Singapore | GEO:GSE121248 | Affymetrix GPL570 | Cirrhosis liver vs HCC | 70 | 8.041 | 0.111 | 37 | 6.893 | 0.126 |
Wurmbach E et al. (2007) | USA | Oncomine:Wurmbach liver | Affymetrix GPL570 | Cirrhosis liver vs. HCC and relapse tissues | 35 | 8.049 | 0.234 | 40 | 6.263 | 0.088 |
Mas VR et al. (2009) | USA | Oncomine:Mas liver | Affymetrix GPL96 | Cirrhosis liver vs. HCC and relapse tissues | 64 | 6.463 | 0.109 | 60 | 6.080 | 0.084 |
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