Research Article
Complete Chloroplast Genomes of 14 Mangroves: Phylogenetic and Comparative Genomic Analyses
Table 2
Gene content of the 14 mangrove chloroplast genomes.
| | Pongamia pinnata | Avicennia marina | Excoecaria agallocha | Bruguiera sexangula | Kandelia obovata | Rhizophora stylosa | Hibiscus tiliaceus | Heritiera littoralis | Thespesia populnea | Ceriops tagal | Laguncularia racemosa | Sonneratia ovata | Pemphis acidula | Xylocarpus moluccensis |
| Total gene number | 127 | 133 | 132 | 128 | 129 | 129 | 130 | 129 | 129 | 130 | 130 | 130 | 131 | 131 | Transfer RNAs (tRNA) | 35 | 37 | 37 | 37 | 37 | 37 | 37 | 36 | 37 | 37 | 37 | 37 | 37 | 37 | Ribosomal RNAs (rRNAs) | 8 | 8 | 8 | 8 | 8 | 8 | 8 | 8 | 8 | 8 | 8 | 8 | 8 | 8 | Coding genes | 84 | 88 | 87 | 83 | 84 | 84 | 85 | 85 | 84 | 85 | 85 | 85 | 86 | 86 | Photosystems I | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | Photosystems II | 15 | 14 | 14 | 14 | 14 | 14 | 14 | 14 | 14 | 14 | 14 | 14 | 14 | 14 | Cytochrome b/f complex | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | ATP synthase | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | NADH dehydrogenase | 12 | 12 | 12 | 12 | 12 | 12 | 12 | 12 | 12 | 12 | 12 | 12 | 12 | 12 | Rubisco large subunit | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | RNA polymerase | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | Ribosomal proteins (small subunit) | 14 | 14 | 14 | 13 | 13 | 13 | 14 | 14 | 14 | 14 | 14 | 14 | 15 | 15 | Ribosomal proteins (large subunit) | 10 | 11 | 11 | 10 | 11 | 11 | 11 | 11 | 11 | 11 | 11 | 11 | 11 | 11 | Assembly/stability of photosystem I | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | RNA processing | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | Chloroplast envelope membrane protein | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | Cytochrome c synthesis | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | Proteins of unknown function | 3 | 4 | 4 | 4 | 4 | 4 | 4 | 3 | 3 | 4 | 4 | 4 | 4 | 4 | ATP-dependent protease | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | Fatty acid biosynthetic | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | Translation initiation factor | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | Putative uncharacterized protein | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Proteasome subunit beta type-1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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