Complete Chloroplast Genomes of 14 Mangroves: Phylogenetic and Comparative Genomic Analyses

Table 2

Gene content of the 14 mangrove chloroplast genomes.

	Pongamia pinnata	Avicennia marina	Excoecaria agallocha	Bruguiera sexangula	Kandelia obovata	Rhizophora stylosa	Hibiscus tiliaceus	Heritiera littoralis	Thespesia populnea	Ceriops tagal	Laguncularia racemosa	Sonneratia ovata	Pemphis acidula	Xylocarpus moluccensis
Total gene number	127	133	132	128	129	129	130	129	129	130	130	130	131	131
Transfer RNAs (tRNA)	35	37	37	37	37	37	37	36	37	37	37	37	37	37
Ribosomal RNAs (rRNAs)	8	8	8	8	8	8	8	8	8	8	8	8	8	8
Coding genes	84	88	87	83	84	84	85	85	84	85	85	85	86	86
Photosystems I	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Photosystems II	15	14	14	14	14	14	14	14	14	14	14	14	14	14
Cytochrome b/f complex	6	6	6	6	6	6	6	6	6	6	6	6	6	6
ATP synthase	6	6	6	6	6	6	6	6	6	6	6	6	6	6
NADH dehydrogenase	12	12	12	12	12	12	12	12	12	12	12	12	12	12
Rubisco large subunit	1	1	1	1	1	1	1	1	1	1	1	1	1	1
RNA polymerase	4	4	4	4	4	4	4	4	4	4	4	4	4	4
Ribosomal proteins (small subunit)	14	14	14	13	13	13	14	14	14	14	14	14	15	15
Ribosomal proteins (large subunit)	10	11	11	10	11	11	11	11	11	11	11	11	11	11
Assembly/stability of photosystem I	2	2	2	2	2	2	2	2	2	2	2	2	2	2
RNA processing	1	1	1	1	1	1	1	1	1	1	1	1	1	1
Chloroplast envelope membrane protein	1	1	1	1	1	1	1	1	1	1	1	1	1	1
Cytochrome c synthesis	1	1	1	1	1	1	1	1	1	1	1	1	1	1
Proteins of unknown function	3	4	4	4	4	4	4	3	3	4	4	4	4	4
ATP-dependent protease	1	1	1	1	1	1	1	1	1	1	1	1	1	1
Fatty acid biosynthetic	1	1	1	1	1	1	1	1	1	1	1	1	1	1
Translation initiation factor	0	1	0	0	0	0	0	1	0	0	0	0	0	0
Putative uncharacterized protein	0	2	2	0	0	0	0	0	0	0	0	0	0	0
Proteasome subunit beta type-1	1	1	1	1	1	1	1	1	1	1	1	1	1	1