Genetic Diversity of HIV-1 in Krasnoyarsk Krai: Area with High Levels of HIV-1 Recombination in Russia

Figure 4

The mosaic pattern of three HIV-1 URF63/A recombinants. Results of recombination breakpoint analyses carried out using Recombinant Identification Program for HIV-1 URF63/A Krasnoyarsk 25, 29, 33, 37, 42, 55, 56, 59, 70, 83, 94, and 112. Bootscanning plots of URF63/A with subtype A6 (consensus_A6, red line), CRF63_02A1 (63_02A.RU.10.10RU663, blue line), and subtype В (consensus_В, green line) as reference genotypes with a window size of 200 nt and confidence threshold 90%.