Research Article

Bioinformatic Analysis Identified Potentially Prognostic Long Noncoding RNAs and MicroRNAs for Gastric Cancer

Table 1

top 5 GO terms in each category enriched by target genes of GC. GO: Gene Ontology; MF: molecular function; BP: biological process; CC: cellular component.

OntologyIDDescriptionCount valueGenes

MFGO: 0003700Transcription factor activity, sequence-specific DNA binding300.005212POU6F1, E2F3, JDP2, POU6F2, NR6A1, SOX4, SOX6, ZEB1, ZBTB16, TBPL2, MEIS2, POU5F1, PAX7, FOXD4, MAF, FOXL2, TBX15, SMAD9, EOMES, ESRRG, ZFP28, STAT1, FOXP2, UHRF1, FOXD4L1, PBX1, FOXC1, FOXI1, KLF4, PEG3
GO: 0043565Sequence-specific DNA binding252.82E-05MAF, JDP2, SATB2, FOXL2, NR6A1, ESRRG, EOMES, GRHL3, EN2, SOX6, SIX4, NR4A3, FOXP2, FOXD4L1, MEIS2, POU5F1, PAX7, LHX5, POU4F1, PBX1, FOXC1, FOXI1, LHX9, FOXD4, FOXD4L5
GO:0005509Calcium ion binding220.022085ME1, SLC8A1, NCALD, MICU3, SNCA, DUOX1, PCDHGB7, FLG2, SPARC, MMP14, SLIT1, ATP2B2, DGKB, FAT3, SLC24A2, AIF1L, CACNA1E, VCAN, PLCD1, NCAN, CDH10, CSN2
GO: 0042803Protein homodimerization activity200.075097XDH, FGFR1, TBX15, CADM2, NR6A1, BIRC5, ZBTB16, NR4A3, ZNF365, STAT1, CDSN, FOXP2, TYMS, TFRC, TENM1, MAPK4, VEGFA, ADRA2C, HPGD, DPP4
GO: 0046982Protein heterodimerization activity160.023513CAV1, JDP2, TBX15, SOX4, BIRC5, SOX6, SMC2, MEIS1, FOXP2, AGTR1, TENM1, MAPK4, P2RY1, VEGFA, PBX1, ADRA2C
CCGO: 0005886Plasma membrane1125.6E-06F2RL2, SLC6A1, CADM2, SLC6A3, SNCA, SLC7A8, CASK, AQP4, IL17RB, NRCAM, ATP2B2, S1PR3, AGTR1, DIRAS1, ATP2B4, MALL, KCNK7, GRID2, NEGR1, LIFR, PIM1, COLEC12, ANKRD13B, RCC2, CD300LG, PMP22, UNC13C, SH3GL2, FRAS1, ME1, NCR3LG1, FGFR1, SLC38A4, CAV1, PTH1R, KCNA4, CACNB2, RIMS1, TTYH3, FGG, SERINC5, OPALIN, P2RY1, ADRA2C, PRIMA1, HCN1, VSTM4, OSBPL3, GABRA1, LPP, GABRA5, EPM2A, SLC6A15, NPY5R, EPHA7, SEMA6D, PKP1, SFRP1, RAP1A, ANTXR2, CACNA1E, GNAZ, KCNJ15, OPCML, GLRA2, DUOX1, NBEA, GABBR2, KCNQ5, SLC24A2, GUCY1A2, ANO3, TMEM100, FAM129A, JPH1, DPP4, SGK1, CACNG8, PCDHGB7, PIGR, MMP14, PRKCB, GRM5, ALOX15, CYBRD1, ADAM12, LIMS2, TRIB3, SLC19A3, ZBTB16, GJC1, FNDC4, SLCO1A2, DGKB, GPM6A, FAT3, KRT1, PCSK9, PLCD1, HTR3B, SLC8A1, SLC8A2, KL, MAP1B, SPARC, TFRC, TENM1, CDON, KCNN3, SLC6A6, BAMBI, CDH10
GO: 0005887Integral component of plasma membrane531.18E-06F2RL2, KCNJ15, NRG3, SLC6A1, CADM2, SLC6A3, GLRA2, SLC7A8, AQP4, GABBR2, IL17RB, NRCAM, ATP2B2, AGTR1, S1PR3, ATP2B4, KCNK7, SLC24A2, GRID2, MPP1, LIFR, PIGR, MMP14, SLC7A14, GRM5, CLDN1, SLITRK6, FGFR1, SLC38A4, CAV1, PTH1R, KCNA4, CACNB2, SLC19A3, SLCO1A2, P2RY1, ADRA2C, HTR3B, HCN1, SLC8A1, GABRA1, SLC8A2, KL, PTPRZ1, GABRA5, SLC6A15, NPY5R, EPHA7, TFRC, SEMA6D, TENM1, CDON, SLC6A6
GO: 0005576Extracellular region430.013279F2RL2, FGFR1, NRG3, C6, SNCA, CXCL9, SPINK5, ISM2, CHIT1, ADCYAP1, ITGBL1, IL17RB, NRCAM, FGG, AGT, CREG2, SFTA3, COL12A1, PDGFD, LOX, FGF1, COL4A4, BMP3, HAPLN1, VSTM4, KL, SPARC, IL24, COL5A3, CCL16, SLIT1, CHRDL1, TFRC, SFRP1, TENM1, VEGFA, ANTXR2, VCAN, WNT11, COL1A1, ADAM12, NCAN, CSN2
GO: 0005615Extracellular space370.015039XDH, LYPD3, NRG3, ADAMTS15, SNCA, CXCL9, CHIT1, ADCYAP1, PCSK2, FGG, C1QTNF3, AGT, SOSTDC1, KRT1, COL12A1, PCSK9, PDGFD, LOX, FGF1, INA, BMP3, CES2, KL, PIGR, SPARC, IL24, CCL16, KRT35, SLIT1, ELFN2, TFRC, SFRP1, VEGFA, VCAN, WNT11, COL1A1, CSN2
GO: 0030054Cell junction170.011212GABRA1, CACNG8, MAP1B, GLRA2, SNCA, GABRA5, FERMT1, GABBR2, RIMS1, ATP2B2, ATCAY, SHISA9, GRID2, RAP1A, UNC13C, PRIMA1, UNC13A
BPGO: 0006351Transcription, DNA-templated470.059463863POU6F1, FGFR1, E2F3, JDP2, EZH2, NR6A1, TRIB3, MYEF2, CBX2, SOX6, ZBTB16, ZEB1, MACC1, HOXA2, NPAS3, POU5F1, ZNF697, PAX7, LHX5, PRKAA2, FOXD4, HELLS, NKRF, MAF, SATB1, SATB2, SMAD9, TBX15, ESRRG, EOMES, BIRC5, NR4A3, ZFP28, STAT1, PRKCB, SUV39H2, FOXP2, EYA4, UHRF1, FOXD4L1, BTG2, TENM1, PARP14, MCIDAS, ID4, PEG3, FOXD4L5
GO: 0045944Positive regulation of transcription from RNA polymerase II promoter378.53E-05NR6A1, ONECUT2, CASK, SOX4, SOX6, ZEB1, MEIS1, ADCYAP1, HOXA2, MEIS2, POU5F1, PAX7, P2RY1, POU4F1, FGF1, MAF, PHOX2B, FOXL2, SATB2, ESRRG, EOMES, GRHL3, KLF15, NR4A3, EN2, SIX4, STAT1, UHRF1, MCIDAS, CDON, VEGFA, FOXC1, ID4, PBX1, FOXI1, KLF4, PEG3
GO: 0000122Negative regulation of transcription from RNA polymerase II promoter321.43E-05FGFR1, JDP2, CAV1, EZH2, SNCA, NR6A1, TRIB3, CBX2, SOX6, ZEB1, ZBTB16, HOXA2, MEIS2, POU5F1, POU4F1, ZFP36, MAF, SATB1, FOXL2, SATB2, TBX15, EOMES, NR4A3, STAT1, FOXP2, SUV39H2, UHRF1, BTG2, VEGFA, ID4, KLF4, PEG3
GO: 0045893Positive regulation of transcription, DNA-templated190.008447557CKS1B, E2F3, FOXL2, EOMES, ESRRG, SOX4, SIX4, ZBTB16, STAT1, NPAS3, SFRP1, AGT, MLLT11, LHX5, WNT11, FOXC1, COL1A1, BAMBI, KLF4
GO: 0008284Positive regulation of cell proliferation180.006934366FGFR1, E2F3, ACER2, PTH1R, LIFR, SOX4, BIRC5, IL24, ADCYAP1, S1PR3, SFRP1, VEGFA, PBX1, ID4, PDGFD, FGF1, BAMBI, DPP4