Research Article
Genetic Diversity of Shanlan Upland Rice (Oryza sativa L.) and Association Analysis of SSR Markers Linked to Agronomic Traits
Table 3
Genetic diversity parameters of SSR loci used for genotyping in Shanlan upland rice accessions.
| No. | SSR loci | Number of alleles | Observed heterozygosity | Shannon’s diversity index |
| 1 | RM583 | 5.0 | 0.1855 | 0.3234 | 2 | RM490 | 7.0 | 0.1378 | 0.2304 | 3 | RM443 | 4.0 | 0.3115 | 0.4827 | 4 | RM493 | 8.0 | 0.1032 | 0.1793 | 5 | RM424 | 6.0 | 0.1270 | 0.2177 | 6 | RM423 | 5.0 | 0.1999 | 0.3399 | 7 | RM561 | 7.0 | 0.2134 | 0.3524 | 8 | RM208 | 11.0 | 0.0847 | 0.1554 | 9 | RM71 | 5.0 | 0.1629 | 0.2699 | 10 | RM231 | 7.0 | 0.2015 | 0.3357 | 11 | RM571 | 6.0 | 0.2269 | 0.3582 | 12 | RM8277 | 6.0 | 0.1683 | 0.2887 | 13 | RM85 | 4.0 | 0.1884 | 0.3094 | 14 | RM567 | 9.0 | 0.1461 | 0.2425 | 15 | RM551 | 10.0 | 0.1409 | 0.2473 | 16 | RM471 | 3.0 | 0.2688 | 0.4192 | 17 | RM274 | 2.0 | 0.2948 | 0.4573 | 18 | RM267 | 5.0 | 0.1944 | 0.3270 | 19 | RM190 | 5.0 | 0.1845 | 0.2956 | 20 | RM253 | 5.0 | 0.1584 | 0.2498 | 21 | RM432 | 4.0 | 0.2004 | 0.3204 | 22 | RM481 | 19.0 | 0.0655 | 0.1352 | 23 | RM336 | 13.0 | 0.0797 | 0.1608 | 24 | RM331 | 7.0 | 0.1889 | 0.3235 | 25 | RM72 | 5.0 | 0.1867 | 0.3151 | 26 | RM316 | 10.0 | 0.2073 | 0.3366 | 27 | OSR28 | 8.0 | 0.1231 | 0.2174 | 28 | RM278 | 6.0 | 0.2505 | 0.3817 | 29 | RM219 | 7.0 | 0.1322 | 0.2273 | 30 | RM590 | 5.0 | 0.1482 | 0.2430 | 31 | RM332 | 6.0 | 0.1448 | 0.2467 | 32 | RM21 | 10.0 | 0.0935 | 0.1681 | 33 | RM7102 | 5.0 | 0.1644 | 0.2708 | 34 | RM3331 | 8.0 | 0.1191 | 0.2088 | 35 | RM17 | 6.0 | 0.1540 | 0.2550 | Mean | 6.8 | 0.1702 | 0.2826 |
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