Genetic Diversity of Shanlan Upland Rice (Oryza sativa L.) and Association Analysis of SSR Markers Linked to Agronomic Traits

Table 5

Percentage of total variations explained by SSR markers linked to agronomic traits of Shanlan upland rice accessions (%).

No.	SSR marker	Agronomic traits
		PH	PN	PL	TG	FG	SR	TW
1	OSR28	17.93		12.45
2	RM17	10.20			11.40			24.11
3	RM190				9.50	10.42
4	RM208	42.62		20.63	10.26
5	RM21	10.28		16.56		23.19
6	RM219	10.31						12.71
7	RM253	17.93		12.45	18.09		12.88
8	RM267				9.71
9	RM278							11.59
10	RM331					10.43
11	RM332			12.36	22.52
12	RM3331				9.54
13	RM336		14.43
14	RM423		15.81
15	RM424	10.31
16	RM481	28.67		12.43		19.16	13.55
17	RM493	11.97	11.74	13.22	15.10	14.21	19.64
18	RM567	17.93		12.45	11.95	24.61
19	RM571						20.66
20	RM583					0.12
21	RM590	14.80						16.98
22	RM71	17.93		12.45
23	RM7102							11.59
24	RM72		12.66		14.27
25	RM85			24.18	9.44

PH: plant height; PN: effective panicle number per plant; PL: panicle length; TG: total number of grains; FG: number of filled grains; SR: seed setting rate; TW: 1000-grain weight.