Research Article

LSTMCNNsucc: A Bidirectional LSTM and CNN-Based Deep Learning Method for Predicting Lysine Succinylation Sites

Table 3

Significant KEGG pathway terms.

SpeciesKEGG termsBenjamini

E. coliMetabolic pathways3.30-08
Biosynthesis of amino acids1.00-06
Biosynthesis of secondary metabolites2.40-04
Biosynthesis of antibiotics7.40-04
Lysine biosynthesis3.30-03

H. sapiensBiosynthesis of antibiotics3.70-10
Metabolic pathways2.80-09
Ribosome3.40-08
Valine, leucine, and isoleucine degradation1.30-06
Carbon metabolism6.20-06
Oxidative phosphorylation1.10-05
Parkinson’s disease2.60-05
Citrate cycle (TCA cycle)1.00-04
Huntington’s disease4.10-04
Alzheimer’s disease7.80-04
Aminoacyl-tRNA biosynthesis1.00-03
Butanoate metabolism3.40-03
Proteasome8.20-03

M. musculusMetabolic pathways6.20-26
Parkinson’s disease8.50-11
Oxidative phosphorylation3.40-10
Nonalcoholic fatty liver disease (NAFLD)1.00-09
Huntington’s disease2.80-09
Alzheimer’s disease1.40-08
Ribosome3.30-07
Peroxisome1.80-06
Glycine, serine, and threonine metabolism1.50-05
Pyruvate metabolism9.00-05
Propanoate metabolism2.40-04
Valine, leucine, and isoleucine degradation1.90-03
Glyoxylate and dicarboxylate metabolism3.10-03
Biosynthesis of antibiotics5.60-03

M. tuberculosisMetabolic pathways1.00-04
Microbial metabolism in diverse environments2.50-04
Biosynthesis of antibiotics4.40-04
Biosynthesis of secondary metabolites1.00-02
Propanoate metabolism1.00-02

S. cerevisiaeMetabolic pathways5.20-05
Biosynthesis of amino acids3.30-04
2-Oxocarboxylic acid metabolism7.90-04
Biosynthesis of antibiotics3.50-03
Oxidative phosphorylation3.50-03