Transcriptomic Network Regulation of Rat Tooth Germ from Bell Differentiation Stage to Secretory Stage: MAPK Signaling Pathway Is Crucial to Extracellular Matrix Remodeling

Table 3

lncRNA and its target mRNA in cis.

lncRNA	Location	lncRNA_regulation	Target mRNA	mRNA_regulation	Correlation
NONRATG008597.2	Linc	Up	Egr3	Up	1
NONRATG001431.2	Exonic	Down	Golga7b	Down	1
NONRATG007993.2	Exonic	Up	Ambn	Up	1
NONRATG001139.2	Exonic	Down	Fgf4	Down	1
NONRATG018442.2	Exonic	Up	Col9a2	Up	1
NONRATG015154.2	Exonic	Down	Prom2	Down	1
NONRATG007649.2	Linc	Down	LOC310926	Down	1
NONRATG003202.2	Exonic	Up	Bmerb1	Up	0.9411
NONRATG011008.2	Antisense	Up	Ablim3	Up	0.9428
NONRATG013344.2	Antisense	Down	Sox2	Down	0.9428
NONRATG012390.2	Linc	Up	Hey1	Up	0.9428
NONRATG008875.2	Exonic	Up	Tgm1	Up	0.9428
NONRATG008146.2	Exonic	Up	Crmp1	Up	0.9428
NONRATG020673.2	Exonic	Up	Tnfaip2	Up	0.9428
NONRATG004794.2	Exonic	Up	Nr1d1	Up	0.9428
NONRATG001943.2	Exonic	Up	Bcl3	Up	0.9428
NONRATG023047.2	Exonic	Up	Col5a3	Up	0.9428
NONRATG015793.2	Linc	Up	Slc38a11	Up	0.9428
NONRATG020568.2	Exonic	Up	Tgfb3	Up	0.9428
NONRATG011271.2	Exonic	Up	Lox	Up	0.9428
NONRATG007763.2	Exonic	Up	Pik3ip1	Up	0.8857
NONRATG002964.2	Exonic	Up	Pip5k1b	Up	0.8857
NONRATG019669.2	Antisense	Up	Kcnk3	Up	0.8857
NONRATG021992.2	Exonic	Down	Ly6h	Down	0.8857
NONRATG013084.2	Exonic	Down	Cartpt	Down	0.8261
NONRATG007559.2	Antisense	Up	Ambn	Up	0.8285
NONRATG010089.2	Exonic	Down	Tfap2a	Down	0.8285
NONRATG003939.2	Exonic	Up	Rundc3a	Up	0.8285
NONRATG003513.2	Exonic	Up	Pmp22	Up	0.8285
NONRATG012335.2	Antisense	Up	Adamts12	Up	0.8285
NONRATG000639.2	Antisense	Up	Synm	Up	0.7714
NONRATG024442.2	Exonic	Up	Col5a2	Up	0.7714
NONRATG007316.2	Exonic	Up	Atp1a2	Up	0.7714
NONRATG022623.2	Exonic	Down	Pclaf	Down	0.7714
NONRATG017361.2	Exonic	Up	Tmem229a	Up	0.7714
NONRATG003057.2	Exonic	Up	Crtac1	Up	0.6982
NONRATG009280.2	Exonic	Down	Slc5a5	Up	-0.6571

Note: the table is sorted in order of relevance.