Research Article

Presence of CRISPR CAS-Like Sequences as a Proposed Mechanism for Horizontal Genetic Exchanges between Trichomonas vaginalis and Its Associated Virus: A Comparative Genomic Analysis with the First Report of a Putative CRISPR CAS Structures in Eukaryotic Cells

Table 1

Giant viruses found in analyzing spacer using BLAST.

DescriptionPercent ident by BLASTQuery coverAccession numberFamily/order

Pithovirus LCPAC101 genomic sequence88.46%98%MK500440.1Megavirales/Pithoviridae
Klosneuvirus KNV1 Klosneuvirus_5 genomic sequence91.30%98%KY684112.1Mimiviridae/Klosneuvirinae
Terrestrivirus sp. clone Terrestrivirus_4 genomic sequence95.45%100%MK071982.1Megavirales: Mimiviridae
Acanthamoeba polyphaga mimivirus isolate M4, complete genome91.67%97%JN036606.1Megavirales: Mimiviridae
Pithovirus LCPAC001 genomic sequence89.29%77%MK500428.1Megavirales/Pithoviridae
Mimivirus U306 genome assembly, complete genome: monopartite86.67%69%LT717347.1Megavirales: Mimiviridae
Acanthamoeba castellanii mimivirus DNA, nearly complete genome, strain: Mimivirus shirakomae86.67%74%AP017645.1Megavirales: Mimiviridae
Acanthamoeba castellanii mimivirus DNA, nearly complete genome, strain: Mimivirus kasaii86.67%74%AP017644.1Megavirales: Mimiviridae
Mimivirus Bombay isolate 1 genomic sequence86.67%74%KU761889.1Mimivirus
Samba virus, complete genome86.67%97%KF959826.2Samba virus/Mimivirus
Niemeyer virus, partial genome86.67%77%KT599914.1Mimivirus group A
Mimivirus terra 2 genome86.67%100%KF527228.1Megavirales: Mimiviridae
Hirudovirus strain Sangsue, complete genome86.67%85%KF493731.1Mimiviridae/Mimivirus
Acanthamoeba castellanii mamavirus strain Hal-V, complete genome86.67%85%JF801956.1Megavirales: Mimiviridae
Acanthamoeba polyphaga mimivirus, complete genome86.67%100%HQ336222.2Megavirales: Mimiviridae
Acanthamoeba polyphaga mimivirus, complete genome86.67%64%AY653733.1Megavirales: Mimiviridae
Mimivirus sp. SH clone 0003 genomic sequence91.30%98%MH046813.1Megavirales: Mimiviridae
Pandoravirus neocaledonia, complete genome100.00%98%NC_037666.1Megavirales/Pandoraviridae
Samba virus, complete genome86.67%100%KF959826.2Samba virus/Mimivirus
Niemeyer virus, partial genome86.67%97%KT599914.1Mimivirus group A
Mimivirus terra 2 genome86.67%77%KF527228.1Megavirales: Mimiviridae
Tupanvirus soda lake, complete genome91.30%69%KY523104.1Mimiviridae
Uncultured Caudovirales phage clone 3S_14, partial genome93.10%74%MF417874.1Caudovirales
Tupanvirus deep ocean, partial genome100.00%74%MF405918.1Mimiviridae
Klosneuvirus KNV1 Klosneuvirus_3 genomic sequence100.00%74%KY684110.1Mimiviridae/Klosneuvirinae
Pandoravirus dulcis, complete genome100.00%70%NC_021858.1Megavirales/Pandoraviridae
Pithovirus sibericum isolate P1084-T, complete genome100.00%85%KF740664.1Megavirales/Pithoviridae
Pandoravirus dulcis, complete genome100.00%85%KC977570.1Megavirales/Pandoraviridae
Pandoravirus celtis, complete genome100.00%85%MH899943.1Megavirales/Pandoraviridae
Cedratvirus Zaza IHUMI strain IHUMI-S29 genome assembly,
chromosome: scaffold_1
100.00%85%LT994652.1Megavirales
Cedratvirus lausannensis genome assembly, chromosome: cClCRIB-75100.00%85%LT907979.1Megavirales
Cedratvirus A11 genome assembly, complete genome: monopartite100.00%69%LT671577.1Megavirales
Harvfovirus sp. clone Harvfovirus_12 genomic sequence100.00%85%MK072254.1Mimiviridae/Klosneuvirinae
Cedratvirus Zaza IHUMI strain IHUMI-S29 genome assembly,
chromosome: scaffold_1
100.00%69%LT994652.1Megavirales
Cedratvirus lausannensis genome assembly, chromosome: cClCRIB-75100.00%85%LT907979.1Megavirales
Cedratvirus A11 genome assembly, complete genome: monopartite100.00%85%LT671577.1Megavirales
Pandoravirus dulcis, complete genome100.00%85%NC_021858.1Megavirales/Pandoraviridae
Brazilian marseillevirus strain BH2014, complete genome100.00%94%KT752522.1Marseilleviridae
Mollivirus sibericum isolate P1084-T, complete genome100.00%85%KR921745.1Mollivirus
Pithovirus sibericum isolate P1084-T, complete genome100.00%83%KF740664.1Megavirales/Pithoviridae
Tunisvirus fontaine2 strain U484, complete genome100.00%75%NC_038511.1Marseilleviridae/Marseillevirus
Pandoravirus dulcis, complete genome100.00%100%KC977570.1Megavirales/Pandoraviridae
Pandoravirus celtis, complete genome77%MK174290.1Megavirales/Pandoraviridae
Microviridae sp. isolate ctbi747, complete genome94.74%83%MH617505.2
Pithovirus LCPAC403 genomic sequence100.00%83%MK500593.1Megavirales/Pithoviridae
Pithovirus LCPAC304 genomic sequence100.00%100%MK500565.1Megavirales/Pithoviridae
Hyperionvirus sp. clone Hyperionvirus_7 genomic sequence100.00%83%MK072389.1Mimiviridae; unclassified Mimiviridae
Hyperionvirus sp. clone Hyperionvirus_4 genomic sequence100.00%83%MK072386.1Mimiviridae; unclassified Mimiviridae
Terrestrivirus sp. clone Terrestrivirus_4 genomic sequence100.00%83%MK071982.1Mimiviridae; unclassified Mimiviridae
Pithovirus LCPAC302 genomic sequence100.00%64%MK500544.1Megavirales/Pithoviridae
Pythium polare RNA virus 1 PpRV1-OPU1176 genomic RNA, complete genome100.00%98%NC_040608.1Totiviridae
Cedratvirus Zaza IHUMI strain IHUMI-S29 genome assembly,
chromosome: scaffold_1
100.00%98%LT994652.1Megavirales
Cedratvirus A11 genome assembly, complete genome:100.00%85%LT671577.1Megavirales
Barrevirus sp. clone Barrevirus_16 genomic sequence100.00%97%MK072013.1Mimiviridae; unclassified Mimiviridae
Barrevirus sp. clone Barrevirus_3 genomic sequence100.00%97%MK072000.1Mimiviridae; unclassified Mimiviridae
Satyrvirus sp. clone Satyrvirus_31 genomic sequence100.00%97%MK072467.1Mimiviridae; unclassified Mimiviridae
Terrestrivirus sp. clone Terrestrivirus_5 genomic sequence100.00%97%MK071983.1Mimiviridae; unclassified Mimiviridae
Acanthamoeba polyphaga moumouvirus, complete genome95.65%69%JX962719.1Mimivirus/moumouvirus
Moumouvirus Monve isolate Mv13-mv, partial genome95.65%69%JN885998.1Mimivirus/moumouvirus
Megavirus lba isolate LBA111, complete genome83.33%69%JX885207.1Megaviridae
Megavirus chiliensis, complete genome83.33%74%JN258408.1Megaviridae
Mimivirus sp. SH clone 0001 genomic sequence95.24%74%MH046811.1Megavirales: Mimiviridae
Circular genetic element sp. isolate ctcf325, complete sequence82.35%72%MH618190.1
Powai lake megavirus isolate 1, complete genome92.00%70%KU877344.1Megaviridae
Mollivirus sibericum isolate P1084-T, complete genome91.30%45%KR921745.1Mollivirus
Hepelivirus isolate HepeV ORF1 gene, partial cds; and ORF2 gene, complete cds100.00%85%JQ898340.1Unclassified RNA viruses
Dasosvirus sp. clone Dasosvirus_10 genomic sequence100.00%100%MK072051Mimiviridae; unclassified Mimiviridae
Tokyovirus A1 DNA, nearly complete genome100.00%100%AP017398.1Marseilleviridae; Marseillevirus; unclassified Marseillevirus
Pandoravirus dulcis, complete genome95.24%100%KC977570.1Megavirales/Pandoraviridae
IAS virus, complete genome100.00%100%KJ003983.1Unclassified bacterial viruses; crAss-like viruses
Pithovirus LCPAC401 genomic sequence100.00%100%MK500585.1Megavirales/Pithoviridae
Bos taurus papillomavirus 17, complete genome100.00%100%KU519392.1
Acanthamoeba castellanii mamavirus strain Hal-V, complete genome100.00%100%JF801956.1Mimivirus/mamavirus
Pithovirus LCPAC406 genomic sequence100.00%50%MK500607.1Megavirales/Pithoviridae
Hubei partiti-like virus 7 strain QTM23269 RdRp gene, complete cds100.00%81%KX884117.1Riboviria; unclassified RNA viruses
Hirudovirus strain Sangsue, complete genome100.00%76%FJ373894.1Mimiviridae/Mimivirus
Pithovirus LCPAC104 genomic sequence88.46%72%MK310184.1Megavirales/Pithoviridae
Klosneuvirus KNV1 Klosneuvirus_1 genomic sequence95.24%63%KY684108.1Mimiviridae/Klosneuvirinae
Megavirus vitis isolate vigne, complete genome92.31%49%MG807319.1Megavirus
Bandra megavirus isolate KK-1 genomic sequence92.31%64%MG779390.1Unclassified Mimiviridae
Megavirus terra1 genome92.31%98%KF527229.1Megaviridae
Megavirus lba isolate LBA111, complete genome92.31%98%JX885207.1Megaviridae
Megavirus courdo11, complete genome92.31%77%JX975216.1Megaviridae /Mimivirus group C
Megavirus courdo7 isolate Mv13-c7, partial genome92.31%83%JN885993.1Megaviridae/Mimivirus group C
Megavirus chiliensis, complete genome92.31%75%JN258408.1Megaviridae

stands for Basic Local Alignment Search Tool.