Computational Intelligence and Neuroscience

Review Article

Mining Big Neuron Morphological Data

Table 1

A short list of tracing software and toolkits.
Software/ToolkitWeb Address AvailabilityReference
Neurolucida  http://www.mbfbioscience.comCommercialHalavi et al. [16]
NeuronJ  https://imagej.net/NeuronJOpen SourceMeijering [17]
Simple Neurite Tracer https://imagej.net/Simple_Neurite_TracerOpen SourceLongair et al. [18]
Sholl Analysis https://imagej.net/Sholl_AnalysisOpen SourceFerreira et al. [19]
NeuronStudiohttp://research.mssm.edu/cnicOpen SourceRodriguez et al. [20]
Vaa3D  http://www.alleninstitute.org/what-we-do/brain-science/research/products-tools/vaa3d/CommercialPeng et al. [21]
FARSIGHT  http://farsight-toolkit.orgOpen SourceLuisi et al. [22]
NeuronCyto  http://neuroncyto.bii.a-star.edu.sg/Open SourceYu et al [23]
Aivia  https://www.drvtechnologies.comCommercialN/A
Imaris http://www.bitplane.com/imaris-for-neuroscientistsCommercialN/A
plugin.