Canadian Journal of Infectious Diseases and Medical Microbiology

Canadian Journal of Infectious Diseases and Medical Microbiology / 2016 / Article

Case Report | Open Access

Volume 2016 |Article ID 2796412 | 4 pages |

A Fatal Case of Necrotizing Fasciitis Caused by a Highly Virulent Escherichia coli Strain

Academic Editor: Federico Martinón-Torres
Received01 Oct 2015
Accepted12 May 2016
Published31 May 2016


Necrotizing fasciitis is a serious disease characterized by the necrosis of the subcutaneous tissues and fascia. E. coli as the etiologic agent of necrotizing fasciitis is a rare occurrence. A 66-year-old woman underwent total abdominal hysterectomy with bilateral salpingo-oophorectomy. She rapidly developed necrotizing fasciitis which led to her death 68 hours following surgery. An E. coli strain was isolated from blood and fascia cultures. DNA microarray revealed the presence of 20 virulence genes.

1. Introduction

Necrotizing fasciitis is a severe disease characterized by the necrosis of the subcutaneous tissues and fascia [1]. Despite antibiotherapy and surgical debridement, mortality caused by necrotizing fasciitis can be as high as 30% [1]. It is usually caused by Streptococcus pyogenes [2], Staphylococcus aureus [3], or a mixture of microorganisms including Streptococcus, S. aureus, Enterobacteriaceae, and some anaerobes [46]. E. coli is a rare cause of necrotizing fasciitis.

Herein, we report a fatal case of necrotizing fasciitis caused by a highly virulent E. coli strain. Its virulence gene complement was determined by DNA microarray.

2. Case Presentation

A 66-year-old woman with a prior history of lipectomy and bowel obstruction underwent total abdominal hysterectomy with bilateral salpingo-oophorectomy (TAH-BSO) consecutive to postmenopausal uterine leiomyomata. The complete blood count on admission was within normal range. She received 1 g of cefazolin immediately after surgery and 2 g of cefazolin was added 8 h and 16 h postoperatively. Bruises around the vulva were first noted 18 h following surgery. A bruise on the abdomen and reduced urine flow and oliguria were noted 26 h after surgery despite extensive intravenous rehydration. The patient was afebrile with a blood pressure of 100/80 mmHg and heart rate of 100 beats/min. A new hematological analysis revealed leukocytosis with a white cell count of 13.8 × 109/L (normal: 4.0–10.8 × 109/L). At 48 h after surgery, the patient was fully conscious and alert and felt no unusual pain but her temperature was 38.3°C, blood pressure 80/40 mmHg, and heart rate 130 beats/min. An abdominal ultrasound did not reveal anything specific. Upon examination, grey subcutaneous lesions on both hips and buttocks and on the vulva were noted. She was quickly transferred to the operating room where necrotizing fasciitis covering the abdomen, the thorax, the back, and the groins was confirmed. Surgical debridement was initiated but stopped after three hours given the very large extent of the necrotized tissues. She received clindamycin, ceftriaxone, and immunoglobulins before surgical debridement; fluconazole and vancomycin were added after debridement. The patient died 16 hours later, 68 hours following the TAH-BSO.

3. Microbiology and DNA Microarray

Both blood and fascia cultures revealed the presence of a Gram-negative bacillus. It was identified as E. coli by API 20E (bioMerieux, Montreal, QC, Canada) with 99.9% certainty and designated LSPQ A134697 (Laboratoire de Santé Publique du Québec, strain A134697). Somatic and flagellar serotypes were identified as O rough:H7, respectively. An antibiotic resistance analysis showed the bacterium to be susceptible to the 14 antibiotics including cefazolin, ceftriaxone, cefotaxime, ceftazidime, cefoxitin, cefotetan, ertapenem, meropenem, imipenem, gentamicin, tobramycin, amikacin, colistin, and ciprofloxacin.

The E. coli LSPQ A134697 genome was further analyzed using an oligonucleotide microarray capable of detecting 189 E. coli virulence genes, according to Bruant et al. [21]. It revealed the presence of at least 20 virulence genes, four encoding toxins, cnf1 (coding for Cnf1, the cytotoxic necrotizing factor 1), hlyA (α-hemolysin), hra (heat resistant agglutinin), and vat (vacuolating autotransporter toxin), six adhesins, fimA (subunit of type 1 fimbriae), fimH (adhesin), sfa (S fimbriae), papA (major structural subunit of pilus), papC (pilus assembly), and papG (specific pilus tip adhesin), one capsule synthesis, kpsMTII (group II capsular polysaccharide synthesis), two siderophores, iroN (catecholate siderophore) and fyuA (Yersinia siderophore receptor), one invasin, ibeA (virulence factor), and six other activities, chuA (heme transport), iss (increased serum survival), ompA and ompT (outer membrane proteins A and T (proteases)), traT (surface exclusion), and yjaA (stress-response protein). Conversely, other known virulence genes such as cnf2 (coding for Cnf2, the cytotoxic necrotizing factor 2), afa (afimbrial adhesins), faeG (F4 fimbrial adhesin), f17A (F17 fimbrial subunit), cdt (cytolethal distending toxin), iuc (aerobactin synthesis), iutA (outer membrane receptor protein), and stx1 and stx2 (Shiga toxins I and II) were not detected.

4. Discussion

Necrotizing fasciitis caused by E. coli is a rare occurrence. Chen et al. [22] showed that E. coli was found in 2 out of 126 (1.6%) patients with necrotizing fasciitis caused by a single etiologic agent. Necrotizing fasciitis caused by E. coli has been reported from chronically ill patients [23, 24] or infants following surgery [25, 26] but with no mention of the virulence factors present. In a study of 102 E. coli strains isolated from skin and soft tissue infections, Petkovšek et al. [27] showed that the toxin genes cnf1 and hlyA were present in 32 and 30% of the isolates, respectively, and that only 4% of the strains harbored eight or more virulence factors. Recently, Grimaldi et al. [28] reported an unusual case of necrotizing fasciitis caused by E. coli. The isolate was capable of producing the Cnf1 toxin and at least nine other virulence factors. Shaked et al. [29] reported seven cases of E. coli necrotizing fasciitis. All seven patients died during hospitalization, three of them during the first 48 h. The cnf1 gene was found in the E. coli strains from two of the latter three cases. It was not researched in the other four cases. No other virulence factors were researched.

We reported here a very rapidly evolving case of an E. coli-induced necrotizing fasciitis. It spread through the soft tissues ultimately leading to the patient’s death, 50 hours following the first apparition of bruises, despite aggressive antibiotic treatment and the bacterium being sensitive to the antibiotics used. DNA microarray revealed the presence of four toxin genes, cnf1, characteristic of necrotoxigenic E. coli (NTEC), a pathotype of extraintestinal pathogenic E. coli (ExPEC), hlyA, hra, and vat. Six fimbrial adhesins and pili revealed here are cell-surface components that facilitate adherence to other cells, an essential step in pathogenesis in addition to 10 additional virulence genes described in Table 1.

Functional category GeneActivity/effect

ToxinsCnf1Causes cell necrosis by activation of GTPases of the Rho family [7] and induces dermal necrosis in rabbits [8]
hlyA-hemolysin that exhibits pore-forming activities in the membrane of erythrocytes and other cells leading to cell lysis [9]
hraPromotes agglutination of human erythrocytes and colonic cells, bacterial autoaggregation, enhanced biofilm formation, and aggregative adhesion [10]
vatPossesses a vacuolating cytotoxic activity on host cells [11]

AdhesinsfimA Mediate a series of signaling events that affect bacterial invasion and promote pro- or anti-inflammatory events [12]

kpsMTIIInvolved in defense avoidance mechanism [13]

SiderophoresiroN Involved in chelation and delivery of iron to bacteria which favor proliferation and enhance pathogenesis [14]

Other activitiesibeAPlays a key role in invasion process, intramacrophage survival, and inflammatory response [15]
chuABinds host hemoproteins and transfers the coordinated heme molecule into the bacterium periplasm, where an ABC transport system delivers it to the cytoplasm [16]
issIncreases resistance to serum [17]
ompA Serve various functions crucial to cell viability and activity, including structural support, catalysis, active transport, and passive diffusion [18]
traTConfers resistance to the bactericidal activities of serum [19]
yjaAInvolved in the stress response of E. coli to hydrogen peroxide and acid as well as in biofilm formation [20]

Various subsets of the virulence factors present in E. coli LSPQ A134697 have been identified in ExPEC strains, most notably in uropathogenic E. coli (UPEC), the causative agent of the vast majority of urinary tract infections, with the exception of the product of the chuA gene, present in enterohemorrhagic E. coli (EHEC). Together, these virulence factors cover a wide range of activities in toxicity, attachment, invasion, immune suppression, bacterial cell viability, and iron scavenging. The unusually large complement of virulence genes found here identifies this E. coli strain as a potentially very aggressive pathogen capable of surviving the host defense mechanisms. Whether some of these virulence factors, alone, or in various combinations with other factors could also provide some novel mechanisms of resistance to the antibiotics used is unknown and worth further investigating.

The current work was the first to report such a large complement of virulence factors in a fatal case of necrotizing fasciitis caused by E. coli. It lays the foundations for a better understanding of the various mechanisms involved in the very high pathogenicity of this particular and deadly E. coli strain. However, risk factors and interactions with the host can also play a crucial role in infection development and its rapid progression. In this study, the origin of this E. coli strain remains unknown. We are now in the process of determining the nucleotide sequence of its genome. It will be compared with other E. coli genome sequences, including UPEC and non-UPEC strains isolated from humans and animals.

Competing Interests

The authors have no conflict of interests to declare.


  1. D. A. Anaya and E. P. Dellinger, “Necrotizing soft-tissue infection: diagnosis and management,” Clinical Infectious Diseases, vol. 44, no. 5, pp. 705–710, 2007. View at: Publisher Site | Google Scholar
  2. L. Johansson, P. Thulin, D. E. Low, and A. Norrby-Teglund, “Getting under the skin: the immunopathogenesis of Streptococcus pyogenes deep tissue infections,” Clinical Infectious Diseases, vol. 51, no. 1, pp. 58–65, 2010. View at: Publisher Site | Google Scholar
  3. N.-C. Cheng, J.-T. Wang, S.-C. Chang, H.-C. Tai, and Y.-B. Tang, “Necrotizing fasciitis caused by Staphylococcus aureus: the emergence of methicillin-resistant strains,” Annals of Plastic Surgery, vol. 67, no. 6, pp. 632–636, 2011. View at: Publisher Site | Google Scholar
  4. I. Brook and E. H. Frazier, “Clinical and microbiological features of necrotizing fasciitis,” Journal of Clinical Microbiology, vol. 33, no. 9, pp. 2382–2387, 1995. View at: Google Scholar
  5. D. Elliott, J. A. Kufera, and R. A. M. Myers, “The microbiology of necrotizing soft tissue infections,” American Journal of Surgery, vol. 179, no. 5, pp. 361–366, 2000. View at: Publisher Site | Google Scholar
  6. C.-H. Wong, H.-C. Chang, S. Pasupathy, L.-W. Khin, J.-L. Tan, and C.-O. Low, “Necrotizing fasciitis: clinical presentation, microbiology, and determinants of mortality,” Journal of Bone and Joint Surgery—Series A, vol. 85, no. 8, pp. 1454–1460, 2003. View at: Google Scholar
  7. Y. Horiguchi, “Escherichia coli cytotoxic necrotizing factors and Bordetella dermonecrotic toxin: the dermonecrosis-inducing toxins activating Rho small GTPases,” Toxicon, vol. 39, no. 11, pp. 1619–1627, 2001. View at: Publisher Site | Google Scholar
  8. A. Caprioli, V. Falbo, L. G. Roda, F. M. Ruggeri, and C. Zona, “Partial purification and characterization of an Escherichia coli toxic factor that induces morphological cell alterations,” Infection and Immunity, vol. 39, no. 3, pp. 1300–1306, 1983. View at: Google Scholar
  9. M. Skals, N. R. Jorgensen, J. Leipziger, and H. A. Praetorius, “α-hemolysin from Escherichia coli uses endogenous amplification through P2X receptor activation to induce hemolysis,” Proceedings of the National Academy of Sciences of the United States of America, vol. 106, no. 10, pp. 4030–4035, 2009. View at: Publisher Site | Google Scholar
  10. J. M. Fleckenstein, L. E. Lindler, E. A. Elsinghorst, and J. B. Dale, “Identification of a gene within a pathogenicity island of enterotoxigenic Escherichia coli H10407 required for maximal secretion of the heat-labile enterotoxin,” Infection and Immunity, vol. 68, no. 5, pp. 2766–2774, 2000. View at: Publisher Site | Google Scholar
  11. V. R. Parreira and C. L. Gyles, “A novel pathogenicity island integrated adjacent to the thrW tRNA gene of avian pathogenic Escherichia coli encodes a vacuolating autotransporter toxin,” Infection and Immunity, vol. 71, no. 9, pp. 5087–5096, 2003. View at: Publisher Site | Google Scholar
  12. K. A. Kline, S. Fälker, S. Dahlberg, S. Normark, and B. Henriques-Normark, “Bacterial adhesins in host-microbe interactions,” Cell Host and Microbe, vol. 5, no. 6, pp. 580–592, 2009. View at: Publisher Site | Google Scholar
  13. J. R. Johnson and T. T. O'Bryan, “Detection of the Escherichia coli group 2 polysaccharide capsule synthesis gene kpsM by a rapid and specific PCR-based assay,” Journal of Clinical Microbiology, vol. 42, no. 4, pp. 1773–1776, 2004. View at: Publisher Site | Google Scholar
  14. V. I. Holden and M. A. Bachman, “Diverging roles of bacterial siderophores during infection,” Metallomics, vol. 7, no. 6, pp. 986–995, 2015. View at: Publisher Site | Google Scholar
  15. R. J. Cieza, J. Hu, B. N. Ross, E. Sbrana, and A. G. Torres, “The IbeA invasin of adherent-invasive Escherichia coli mediates nteraction with intestinal epithelia and macrophages,” Infection and Immunity, vol. 83, no. 5, pp. 1904–1918, 2015. View at: Publisher Site | Google Scholar
  16. Q. Gao, X. Wang, H. Xu et al., “Roles of iron acquisition systems in virulence of extraintestinal pathogenic Escherichia coli: salmochelin and aerobactin contribute more to virulence than heme in a chicken infection model,” BMC Microbiology, vol. 12, article 143, 2012. View at: Publisher Site | Google Scholar
  17. T. J. Johnson, Y. M. Wannemuehler, and L. K. Nolan, “Evolution of the iss gene in Escherichia coli,” Applied and Environmental Microbiology, vol. 74, no. 8, pp. 2360–2369, 2008. View at: Publisher Site | Google Scholar
  18. C. Ye, Q. Chai, M. Zhong, and Y. Wei, “Effect of crowding by ficolls on OmpA and OmpT refolding and membrane insertion,” Protein Science, vol. 22, no. 2, pp. 239–245, 2013. View at: Publisher Site | Google Scholar
  19. S. Sukupolvi and C. D. O'Connor, “TraT lipoprotein, a plasmid-specified mediator of interactions between gram-negative bacteria and their environment,” Microbiological Reviews, vol. 54, no. 4, pp. 331–341, 1990. View at: Google Scholar
  20. J. Lee, S. R. Hiibel, K. F. Reardon, and T. K. Wood, “Identification of stress-related proteins in Escherichia coli using the pollutant cis-dichloroethylene,” Journal of Applied Microbiology, vol. 108, no. 6, pp. 2088–2102, 2010. View at: Publisher Site | Google Scholar
  21. G. Bruant, C. Maynard, S. Bekal et al., “Development and validation of an oligonucleotide microarray for detection of multiple virulence and antimicrobial resistance genes in Escherichia coli,” Applied and Environmental Microbiology, vol. 72, no. 5, pp. 3780–3784, 2006. View at: Publisher Site | Google Scholar
  22. I.-C. Chen, W.-C. Li, Y.-C. Hong, S.-S. Shie, W.-C. Fann, and C.-T. Hsiao, “The microbiological profile and presence of bloodstream infection influence mortality rates in necrotizing fasciitis,” Critical Care, vol. 15, no. 3, article R152, 2011. View at: Publisher Site | Google Scholar
  23. D. M. Li, L. D. Lun, and X. R. Chen, “Necrotising fasciitis with Escherichia coli,” The Lancet Infectious Diseases, vol. 6, no. 7, p. 456, 2006. View at: Publisher Site | Google Scholar
  24. C.-T. Liu, Y.-C. Chen, T.-H. Chen, and T.-Y. Ou, “Necrotizing fasciitis of thigh associated with Escherichia Coli bacteremia in a patient on chronic hemodialysis,” Hemodialysis International, vol. 16, no. 4, pp. 564–567, 2012. View at: Publisher Site | Google Scholar
  25. M. A. Alsaif and J. L. Robinson, “Escherichia coli necrotizing fasciitis in Hirschsprung's disease,” Journal of Pediatric Surgery Case Reports, vol. 3, no. 4, pp. 174–175, 2015. View at: Publisher Site | Google Scholar
  26. L. Barker, K. Pringle, and J. Cusack, “Necrotising fasciitis with Escherichia coli in a newborn infant after abdominal surgery,” Archives of Disease in Childhood: Fetal and Neonatal Edition, vol. 98, no. 5, pp. F399–F404, 2013. View at: Publisher Site | Google Scholar
  27. Ž. Petkovšek, K. Eleršič, M. Gubina, D. Žgur-Bertok, and M. S. Erjavec, “Virulence potential of Escherichia coli isolates from skin and soft tissue infections,” Journal of Clinical Microbiology, vol. 48, no. 9, pp. 3462–3463, 2010. View at: Publisher Site | Google Scholar
  28. D. Grimaldi, S. Bonacorsi, H. Roussel et al., “Unusual ’flesh-eating’ strain of Escherichia coli,” Journal of Clinical Microbiology, vol. 48, no. 10, pp. 3794–3796, 2010. View at: Publisher Site | Google Scholar
  29. H. Shaked, Z. Samra, M. Paul et al., “Unusual ‘flesh-eating’ strains of Escherichia coli,” Journal of Clinical Microbiology, vol. 50, no. 12, pp. 4008–4011, 2012. View at: Publisher Site | Google Scholar

Copyright © 2016 Sadjia Bekal et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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