Research Article
Comparative Genomics Reveals Pathogenicity-Related Loci in Shewanella algae
Table 2
Virulence genes shared with S. algae strains in this study.
| Gene | locus_tag | Length | locus_tag | Length | locus_tag | Length | locus_tag | Length |
| Strains | MARS 14 | YHL | CHL | ACCC |
| hlyA | BN1227_RS19795 | 443 | AYI97_RS17645 | 443 | AYI82_RS07480 | 443 | AYI77_RS13890 | 443 |
| hlyD | BN1227_RS18765 | 352 | AYI97_RS03440 | 352 | AYI82_RS00925 | 352 | AYI77_RS05040 | 352 | BN1227_RS19395 | 349 | AYI97_RS04065 | 349 | AYI82_RS01570 | 349 | AYI77_RS08410 | 349 | BN1227_RS08585 | 314 | AYI97_RS05045 | 314 | AYI82_RS17560 | 314 | AYI77_RS14620 | 314 |
| hlyIII | BN1227_RS10295 | 226 | AYI97_RS09385 | 226 | AYI82_RS06545 | 226 | AYI77_RS04320 | 226 |
| tolC | BN1227_RS02290 | 424 | AYI97_RS03690 AYI97_RS12455 AYI97_RS17535 AYI97_RS18425 | 466 438 467 491 | AYI82_RS01185 AYI82_RS03510 AYI82_RS07370 | 466 438 467 | AYI77_RS01075 AYI77_RS01845 AYI77_RS02720 AYI77_RS04785 AYI77_RS13995 | 491 | BN1227_RS02895 | 438 | 438 | BN1227_RS03705 | 491 | 424 | BN1227_RS12395 | 438 | 466 | BN1227_RS19025 | 466 | 467 | BN1227_RS19685 | 467 | |
| htpB (groL) | BN1227_RS18535 | 546 | AYI97_RS03170 | 546 | AYI82_RS00700 | 546 | AYI77_RS05265 | 546 |
| galU | BN1227_RS14240 | 303 | AYI97_RS19990 | 303 | AYI82_RS13425 | 303 | AYI77_RS03360 | 303 | AYI82_RS18495 | 294 | AYI77_RS16730 | 294 |
| exbB | BN1227_RS13275 | 175 | AYI97_RS02650 | 238 | AYI82_RS00200 | 238 | AYI77_RS07050 | 175 | BN1227_RS13280 | 451 | AYI97_RS04225 | 164 | AYI82_RS01760 | 164 | AYI77_RS07055 | 451 | BN1227_RS17925 | 238 | AYI97_RS14790 | 175 | AYI82_RS21410 | 175 | AYI77_RS08255 | 164 | BN1227_RS19555 | 164 | AYI97_RS14795 | 451 | AYI82_RS21415 | 451 | AYI77_RS08875 | 238 |
| exbD | BN1227_RS13270 | 134 | AYI97_RS02655 | 135 | AYI82_RS00205 | 135 | AYI77_RS07045 | 134 | BN1227_RS17930 | 135 | AYI97_RS04230 | 135 | AYI82_RS01765 | 135 | AYI77_RS08250 | 135 | BN1227_RS19560 | 135 | AYI97_RS14785 | 134 | AYI82_RS21405 | 134 | AYI77_RS08870 | 135 |
| cheY | BN1227_RS07095 | 127 | AYI97_RS06385 | 127 | AYI82_RS05630 | 127 | AYI77_RS20450 | 127 |
| cheZ | BN1227_RS07100 | 245 | AYI97_RS06380 | 245 | AYI82_RS05625 | 245 | AYI77_RS20455 | 245 |
| cheA | BN1227_RS01115 | 701 | AYI97_RS06375 | 776 | AYI82_RS05620 | 770 | AYI77_RS12010 | 696 | BN1227_RS07105 | 776 | AYI97_RS16805 | 696 | AYI82_RS09360 | 701 | AYI77_RS20925 | 754 |
| cheW | BN1227_RS07130 | 164 | AYI97_RS06350 | 164 | AYI82_RS05595 | 164 | AYI77_RS20950 | 164 | BN1227_RS01120 | 183 | AYI97_RS16800 | 183 | AYI82_RS05600 | 336 | AYI77_RS12015 | 183 | BN1227_RS07125 | 336 | AYI97_RS06355 | 335 | AYI82_RS09355 | 183 | AYI77_RS20945 | 336 |
| clpP | BN1227_RS08465 | 202 | AYI97_RS05170 | 202 | AYI82_RS17685 | 202 | AYI77_RS14495 | 202 |
| FlgA | BN1227_RS06885 | 235 | AYI97_RS06595 | 235 | AYI82_RS05050 | 248 | AYI77_RS09380 | 248 | BN1227_RS21260 | 248 | AYI97_RS14310 | 248 | AYI82_RS05840 | 235 | AYI77_RS20850 | 235 |
| FlgB | BN1227_RS06900 | 132 | AYI97_RS06580 | 132 | AYI82_RS05045 | 116 | AYI77_RS09385 | 116 | BN1227_RS21255 | 116 | AYI97_RS14305 | 116 | AYI82_RS05825 | 132 | AYI77_RS20835 | 132 |
| FlgC | BN1227_RS06905 | 138 | AYI97_RS06575 | 138 | AYI82_RS05040 | 136 | AYI77_RS09390 | 136 | BN1227_RS21250 | 136 | AYI97_RS14300 | 136 | AYI82_RS05820 | 138 | AYI77_RS20830 | 138 |
| FlgD | BN1227_RS21245 | 221 | AYI97_RS06570 | 227 | AYI82_RS05035 | 221 | AYI77_RS09395 | 221 | | | AYI97_RS14295 | 221 | AYI82_RS05815 | 227 | AYI77_RS20825 | 227 |
| FlgE | BN1227_RS06915 | 453 | AYI97_RS06565 | 453 | AYI82_RS05810 | 453 | AYI77_RS20820 | 453 |
| FlgF | BN1227_RS06920 | 247 | AYI97_RS06560 | 247 | AYI82_RS05805 | 247 | AYI77_RS20815 | 247 |
| FlgG | BN1227_RS06925 | 262 | AYI97_RS06555 | 262 | AYI82_RS05020 | 261 | AYI77_RS09410 | 261 | BN1227_RS21230 | 261 | AYI97_RS14280 | 261 | AYI82_RS05800 | 262 | AYI77_RS20810 | 262 |
| FlgH | BN1227_RS06930 | 224 | AYI97_RS06550 | 363 | AYI82_RS05015 | 223 | AYI77_RS09415 | 223 | BN1227_RS21225 | 223 | AYI97_RS14275 | 224 223 | AYI82_RS05795 | 224 | AYI77_RS20805 | 224 |
| FlgI | BN1227_RS06935 | 363 | AYI97_RS06545 | 363 | AYI82_RS05010 | 373 | AYI77_RS09420 | 359 | BN1227_RS21220 | 373 | AYI97_RS14270 | 373 | AYI82_RS05790 | 363 | AYI77_RS20800 | 363 |
| FlgJ | BN1227_RS06940 | 336 | AYI97_RS06540 | 336 | AYI82_RS05785 | 336 | AYI77_RS20795 | 336 |
| FlgK | BN1227_RS06945 | 641 | AYI97_RS06535 | 641 | AYI82_RS05000 | 456 | AYI77_RS09430 | 456 | BN1227_RS21210 | 456 | AYI97_RS14260 | 456 | AYI82_RS05780 | 641 | AYI77_RS20790 | 641 |
| FlgL | BN1227_RS06950 | 401 | AYI97_RS06530 | 401 | AYI82_RS05775 | 401 | AYI77_RS20785 | |
| FlgM | BN1227_RS06880 | 106 | AYI97_RS06600 | 106 | AYI82_RS05055 | 94 | AYI77_RS09375 | 94 | BN1227_RS21265 | 94 | AYI97_RS14315 | 94 | AYI82_RS05845 | 106 | AYI77_RS20855 | 106 |
| FlgN | BN1227_RS06875 | 143 | AYI97_RS06605 | 143 | AYI82_RS05060 | 171 | AYI77_RS09370 | 171 | AYI82_RS05850 | 143 | AYI77_RS20860 | 143 |
| FlgP | BN1227_RS06870 | 155 | AYI97_RS06610 | 155 | AYI82_RS05855 | 155 | AYI77_RS20865 | 155 |
| FlgT | BN1227_RS06860 | 385 | AYI97_RS06620 | 385 | AYI82_RS05865 | 385 | AYI77_RS20875 | 385 |
| FliA | BN1227_RS07090 | 239 | AYI97_RS06390 | 239 | AYI82_RS04955 | 236 | AYI77_RS20445 | 239 | BN1227_RS21165 | 236 | AYI97_RS14215 | 236 | AYI82_RS05635 | 239 | AYI77_RS09475 | 236 |
| FliD | BN1227_RS06970 | 456 | AYI97_RS06510 | 456 | AYI82_RS04980 | 445 | AYI77_RS20325 | 451 | BN1227_RS21190 | 445 | AYI97_RS14240 | 445 | AYI82_RS05755 | 456 | | |
| FliE | BN1227_RS07000 | 110 | AYI97_RS06480 | 110 | AYI82_RS05090 | 111 | AYI77_RS09340 | 111 | BN1227_RS21300 | 111 | AYI97_RS14350 | 111 | AYI82_RS05725 | 110 | AYI77_RS20355 | 110 |
| FliF | BN1227_RS07005 | 569 | AYI97_RS06475 | 569 | AYI82_RS05085 | 555 | AYI77_RS09345 | 555 | BN1227_RS21295 | 555 | AYI97_RS14345 | 555 | AYI82_RS05720 | 569 | AYI77_RS20360 | 569 |
| FliG | BN1227_RS07010 | 347 | AYI97_RS06470 | 347 | AYI82_RS05080 | 328 | AYI77_RS09350 | 324 | BN1227_RS21290 | 328 | AYI97_RS14340 | 328 | AYI82_RS05715 | 347 | AYI77_RS20365 | 347 |
| FliH | BN1227_RS07015 | 322 | AYI97_RS06465 | 324 | AYI82_RS05710 | 324 | AYI77_RS20370 | 324 |
| FliI | BN1227_RS07020 | 446 | AYI97_RS06460 | 446 | AYI82_RS05070 | 441 | AYI77_RS09360 | 441 | BN1227_RS21280 | 441 | AYI97_RS14330 | 441 | AYI82_RS05705 | 446 | AYI77_RS20375 | 446 |
| FliJ | BN1227_RS07025 | 149 | AYI97_RS06455 | 149 | AYI82_RS05700 | 149 | AYI77_RS20380 | 149 |
| FliL | BN1227_RS00740 | 135 | AYI97_RS06445 | 174 | AYI82_RS04960 | 145 | AYI77_RS11650 | 135 | BN1227_RS07035 | 174 | AYI97_RS14220 | 145 | AYI82_RS05690 | 174 | AYI77_RS20390 | 174 | BN1227_RS21170 | 145 | AYI97_RS17155 | 135 | AYI82_RS09710 | 135 | | |
| FliM | BN1227_RS07040 | 342 | AYI97_RS06440 | 342 | AYI82_RS05685 | 342 | AYI77_RS18030 | 238 | BN1227_RS21315 | 300 | AYI97_RS14365 | 300 | AYI77_RS20395 | 342 |
| FliN | BN1227_RS07045 | 126 | AYI97_RS06435 | 126 | AYI82_RS05110 | 114 | AYI77_RS18025 | 114 | BN1227_RS21320 | 114 | AYI97_RS14370 | 114 | AYI82_RS05680 | 126 | AYI77_RS20400 | 126 |
| FliO | BN1227_RS07050 | 119 | AYI97_RS06430 | 119 | AYI82_RS05675 | 119 | AYI77_RS20405 | 119 |
| FliP | BN1227_RS07055 | 247 | AYI97_RS06425 | 247 | AYI82_RS05115 | 265 | AYI77_RS18020 | 265 | BN1227_RS21325 | 265 | AYI97_RS14375 | 265 | AYI82_RS05670 | 247 | AYI77_RS20410 | 247 |
| FliQ | BN1227_RS07060 | 89 | AYI97_RS06420 | 89 | AYI82_RS05120 | 89 | AYI77_RS18015 | 89 | BN1227_RS21330 | 89 | AYI97_RS14380 | 89 | AYI82_RS05665 | 89 | AYI77_RS20415 | 89 |
| FliR | BN1227_RS07065 | 265 | AYI97_RS06415 | 265 | AYI82_RS05125 | 259 | AYI77_RS18010 | 259 | BN1227_RS21335 | 259 | AYI97_RS14385 | 259 | AYI82_RS05660 | 265 | AYI77_RS20420 | 265 |
| FliS | BN1227_RS06980 | 136 | AYI97_RS06500 | 136 | AYI82_RS04975 | 126 | AYI77_RS09455 | 126 | BN1227_RS21185 | 126 | AYI97_RS14235 | 126 | AYI82_RS05745 | 136 | AYI77_RS20335 | 136 |
| flhA | BN1227_RS21345 | 692 | AYI97_RS14395 | 692 | AYI82_RS05135 | 692 | AYI77_RS18000 | 692 | BN1227_RS07075 | 701 | AYI97_RS06405 | 701 | AYI82_RS05650 | 701 | AYI77_RS20430 | 701 |
| flhB | BN1227_RS07140 | 105 | AYI97_RS06340 | 105 | AYI82_RS05585 | 105 | AYI77_RS20960 | 105 | BN1227_RS21340 | 376 | AYI97_RS14390 | 376 | AYI82_RS05130 | 376 | AYI77_RS18005 | 376 | BN1227_RS07070 | 378 | AYI97_RS06410 | 378 | AYI82_RS05655 | 378 | AYI77_RS20425 | 378 |
| flhF | BN1227_RS07080 | 458 | AYI97_RS06400 | 458 | AYI82_RS05645 | 458 | AYI77_RS20435 | 458 |
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