Identification and Functional Annotation of Genome-Wide ER-Regulated Genes in Breast Cancer Based on ChIP-Seq Data

Table 3

Number of ER binding sites identified by three ChIP-Seq peak calling programs (FDR < 0.01).

	Number of ER binding sites
Dataset				Number of overlaped sites
	CisGenome	MACS	QuEST
GSE19013	8137	5583	5418	2019	933
GSE14664	6773	7765	9280	5061