Space Constrained Homology Modelling: The Paradigm of the RNA-Dependent RNA Polymerase of Dengue (Type II) Virus

Table 2

Summary of sequence and structural similarities between the homology models of dengue polymerase (novel and conventional approaches) and the RdRp known structures (RCSB codes in parenthesis) used as templates.

Template	Sequence comparison			RMSd (Å)
	Number of equivalent amino acids	Identity (%)	Similarity (%)	Number of atoms	Novel	Conventional
HCV RdRp (1NB7)	351	18	34	139 (𝐶^𝛼)	1.19	3.57
BVDV RdRp (1S48)	172	18	31	65 (𝐶^𝛼)	1.04	3.04