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Computational and Mathematical Methods in Medicine
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Special Issues
Computational and Mathematical Methods in Medicine
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2015
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Article
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Tab 3
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Review Article
Survey of Natural Language Processing Techniques in Bioinformatics
Table 3
Multiple sequence alignment tools.
Tool
Alignment method
URL
BLAT
Sequence-based
http://genome.ucsc.edu/
BLAST
http://www.ncbi.nlm.nih.gov/
BWA-SW
http://bio-bwa.sourceforge.net
Multilign
Structure-based
http://rna.urmc.rochester.edu/
FoldalignM
http://foldalign.ku.dk/
LocARNA/LocARNA-P
http://www.bioinf.uni-freiburg.de/Software/LocARNA/
MASTR
http://mastr.binf.ku.dk/
RAF
http://contra.stanford.edu/contrafold/
RNASampler
http://ural.wustl.edu/software.html
RNAshapes
http://bibiserv.techfak.uni-bielefeld.de/rnashapes/
RNAalifold
http://www.tbi.univie.ac.at/RNA/
StemLoc
N.A.
MAFFT
http://mafft.cbrc.jp/alignment/software/index.html
MiRAlign
http://bioinfo.au.tsinghua.edu.cn/miralign/