Inference of Gene Regulatory Networks Using Bayesian Nonparametric Regression and Topology Information

Table 1

The prediction performances on the DREAM4 10-gene networks.

	Method	Net 1	Net 2	Net 3	Net 4	Net 5	Average
AUROC	BL	0.7956	0.6334	0.6356	0.8292	0.8034	0.7394
	BGL	0.7956	0.6537	0.6507	0.8422	0.8194	0.7523
	BGL_prior	0.8267	0.7188	0.6640	0.8472	0.8547	0.7823
	G1DBN	0.73	0.64	0.68	0.85	0.92	0.7640
	VBSSM	0.73	0.66	0.77	0.80	0.84	0.7600
AUPR	BL	0.4222	0.3711	0.3926	0.5235	0.4683	0.4355
	BGL	0.4613	0.3582	0.3781	0.5392	0.3368	0.4147
	BGL_prior	0.4750	0.4090	0.3062	0.6207	0.5022	0.4626
	G1DBN	0.37	0.34	0.45	0.69	0.77	0.5240
	VBSSM	0.38	0.41	0.49	0.46	0.64	0.4760