Inference of Gene Regulatory Networks Using Bayesian Nonparametric Regression and Topology Information

Table 3

The prediction performances on the DREAM3 10-gene networks.

	Method	Ecoli 1	Ecoli 2	Yeast 1	Yeast 2	Yeast 3	Average
AUROC	BL	0.4948	0.6880	0.6200	0.4412	0.4091	0.5306
	BGL	0.5339	0.7813	0.5525	0.5348	0.4646	0.5734
	BGL_prior	0.6237	0.7876	0.6363	0.5034	0.4987	0.6099
	Inferelator 1.0	0.49	0.52	0.56	0.45	0.48	0.5000
	Additive ODE	0.53	0.54	0.45	0.53	0.48	0.5060
AUPR	BL	0.2455	0.5325	0.2981	0.2979	0.2009	0.3150
	BGL	0.2076	0.6096	0.2749	0.2871	0.2199	0.3220
	BGL_prior	0.2427	0.6144	0.2795	0.2544	0.2347	0.3251
	Inferelator 1.0	0.15	0.21	0.22	0.33	0.28	0.2380
	Additive ODE	0.16	0.20	0.10	0.31	0.23	0.2000