K-mer-Based Motif Analysis in Insect Species across Anopheles, Drosophila, and Glossina Genera and Its Application to Species Classification

Table 1

Number of statistically significant genome k-mers and minimum score for all species.

Species	No. of significant k-mers	Min. score	No. of hits in JASPAR database
Anopheles_albimanus	1646	0.383	NA
Anopheles_arabiensis	1629	0.349	NA
Anopheles_atroparvus	1425	0.346	NA
Anopheles_christyi	1366	0.414	NA
Anopheles_cracens	1523	0.433	NA
Anopheles_culicifacies	1440	0.371	NA
Anopheles_darlingi	1646	0.413	NA
Anopheles_dirus	1648	0.387	NA
Anopheles_epiroticus	1562	0.375	NA
Anopheles_farauti	1397	0.435	NA
Anopheles_funestus	1579	0.340	NA
Anopheles_gambiae	1509	0.394	NA
Anopheles_koliensis	1309	0.461	NA
Anopheles_maculatus	1613	0.377	NA
Anopheles_melas	1551	0.379	NA
Anopheles_merus	1755	0.281	NA
Anopheles_minimus	1406	0.379	NA
Anopheles_nili	1206	0.427	NA
Anopheles_punctulatus	1276	0.456	NA
Anopheles_quadriannulatus	1771	0.270	NA
Anopheles_sinensis	1381	0.419	NA
Anopheles_stephensi	1666	0.369	NA
Drosophila_albomicans	2279	0.428	23
Drosophila_americana	2209	0.428	22
Drosophila_ananassae	2067	0.481	22
Drosophila_arizonae	2293	0.405	19
Drosophila_biarmipes	1899	0.475	19
Drosophila_bipectinata	1934	0.449	15
Drosophila_busckii	2406	0.442	25
Drosophila_elegans	1768	0.519	19
Drosophila_erecta	2047	0.470	17
Drosophila_eugracilis	1838	0.424	21
Drosophila_ficusphila	1591	0.435	19
Drosophila_grimshawi	2377	0.465	16
Drosophila_kikkawai	1834	0.468	16
Drosophila_melanogaster	1805	0.472	20
Drosophila_miranda	1973	0.429	28
Drosophila_mojavensis	2435	0.435	17
Drosophila_nasuta	1981	0.468	15
Drosophila_navojoa	2239	0.508	19
Drosophila_obscura	2029	0.500	22
Drosophila_persimilis	2111	0.423	24
Drosophila_pseudoobscura	2046	0.393	26
Drosophila_rhopaloa	1757	0.427	17
Drosophila_sechellia	1883	0.456	20
Drosophila_serrata	1820	0.410	15
Drosophila_simulans	1758	0.496	21
Drosophila_suzukii	1937	0.442	21
Drosophila_takahashi	1834	0.364	20
Drosophila_virilis	2415	0.475	23
Drosophila_willistoni	2223	0.425	21
Drosophila_yakuba	1843	0.410	19
Glossina_austeni	1741	0.367	NA
Glossina_brevipalpis	1973	0.360	NA
Glossina_fuscipes	1787	0.370	NA
Glossina_pallidipes	1732	0.373	NA
Glossina_palpalis_gambiensis	1810	0.342	NA
Glossina_morsitans_morsitans	1735	0.377	NA