Research Article
K-mer-Based Motif Analysis in Insect Species across Anopheles, Drosophila, and Glossina Genera and Its Application to Species Classification
Table 1
Number of statistically significant genome k-mers and minimum score for all species.
| Species | No. of significant k-mers | Min. score | No. of hits in JASPAR database |
| Anopheles_albimanus | 1646 | 0.383 | NA | Anopheles_arabiensis | 1629 | 0.349 | NA | Anopheles_atroparvus | 1425 | 0.346 | NA | Anopheles_christyi | 1366 | 0.414 | NA | Anopheles_cracens | 1523 | 0.433 | NA | Anopheles_culicifacies | 1440 | 0.371 | NA | Anopheles_darlingi | 1646 | 0.413 | NA | Anopheles_dirus | 1648 | 0.387 | NA | Anopheles_epiroticus | 1562 | 0.375 | NA | Anopheles_farauti | 1397 | 0.435 | NA | Anopheles_funestus | 1579 | 0.340 | NA | Anopheles_gambiae | 1509 | 0.394 | NA | Anopheles_koliensis | 1309 | 0.461 | NA | Anopheles_maculatus | 1613 | 0.377 | NA | Anopheles_melas | 1551 | 0.379 | NA | Anopheles_merus | 1755 | 0.281 | NA | Anopheles_minimus | 1406 | 0.379 | NA | Anopheles_nili | 1206 | 0.427 | NA | Anopheles_punctulatus | 1276 | 0.456 | NA | Anopheles_quadriannulatus | 1771 | 0.270 | NA | Anopheles_sinensis | 1381 | 0.419 | NA | Anopheles_stephensi | 1666 | 0.369 | NA | Drosophila_albomicans | 2279 | 0.428 | 23 | Drosophila_americana | 2209 | 0.428 | 22 | Drosophila_ananassae | 2067 | 0.481 | 22 | Drosophila_arizonae | 2293 | 0.405 | 19 | Drosophila_biarmipes | 1899 | 0.475 | 19 | Drosophila_bipectinata | 1934 | 0.449 | 15 | Drosophila_busckii | 2406 | 0.442 | 25 | Drosophila_elegans | 1768 | 0.519 | 19 | Drosophila_erecta | 2047 | 0.470 | 17 | Drosophila_eugracilis | 1838 | 0.424 | 21 | Drosophila_ficusphila | 1591 | 0.435 | 19 | Drosophila_grimshawi | 2377 | 0.465 | 16 | Drosophila_kikkawai | 1834 | 0.468 | 16 | Drosophila_melanogaster | 1805 | 0.472 | 20 | Drosophila_miranda | 1973 | 0.429 | 28 | Drosophila_mojavensis | 2435 | 0.435 | 17 | Drosophila_nasuta | 1981 | 0.468 | 15 | Drosophila_navojoa | 2239 | 0.508 | 19 | Drosophila_obscura | 2029 | 0.500 | 22 | Drosophila_persimilis | 2111 | 0.423 | 24 | Drosophila_pseudoobscura | 2046 | 0.393 | 26 | Drosophila_rhopaloa | 1757 | 0.427 | 17 | Drosophila_sechellia | 1883 | 0.456 | 20 | Drosophila_serrata | 1820 | 0.410 | 15 | Drosophila_simulans | 1758 | 0.496 | 21 | Drosophila_suzukii | 1937 | 0.442 | 21 | Drosophila_takahashi | 1834 | 0.364 | 20 | Drosophila_virilis | 2415 | 0.475 | 23 | Drosophila_willistoni | 2223 | 0.425 | 21 | Drosophila_yakuba | 1843 | 0.410 | 19 | Glossina_austeni | 1741 | 0.367 | NA | Glossina_brevipalpis | 1973 | 0.360 | NA | Glossina_fuscipes | 1787 | 0.370 | NA | Glossina_pallidipes | 1732 | 0.373 | NA | Glossina_palpalis_gambiensis | 1810 | 0.342 | NA | Glossina_morsitans_morsitans | 1735 | 0.377 | NA |
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