Research Article | Open Access
Weifang Nie, Weiming Zeng, Jiajun Yang, Yuhu Shi, Le Zhao, Ying Li, Dunyao Chen, Jin Deng, Nizhuan Wang, "Extraction and Analysis of Dynamic Functional Connectome Patterns in Migraine Sufferers: A Resting-State fMRI Study", Computational and Mathematical Methods in Medicine, vol. 2021, Article ID 6614520, 14 pages, 2021. https://doi.org/10.1155/2021/6614520
Extraction and Analysis of Dynamic Functional Connectome Patterns in Migraine Sufferers: A Resting-State fMRI Study
Migraine seriously affects the physical and mental health of patients because of its recurrence and the hypersensitivity to the environment that it causes. However, the pathogenesis and pathophysiology of migraine are not fully understood. We addressed this issue in the present study using an autodynamic functional connectome model (A-DFCM) with twice-clustering to compare dynamic functional connectome patterns (DFCPs) from resting-state functional magnetic resonance imaging data from migraine patients and normal control subjects. We used automatic localization of segment points to improve the efficiency of the model, and intergroup differences and network metrics were analyzed to identify the neural mechanisms of migraine. Using the A-DFCM model, we identified 17 DFCPs—including 1 that was specific and 16 that were general—based on intergroup differences. The specific DFCP was closely associated with neuronal dysfunction in migraine, whereas the general DFCPs showed that the 2 groups had similar functional topology as well as differences in the brain resting state. An analysis of network metrics revealed the critical brain regions in the specific DFCP; these were not only distributed in brain areas related to pain such as Brodmann area 1/2/3, basal ganglia, and thalamus but also located in regions that have been implicated in migraine symptoms such as the occipital lobe. An analysis of the dissimilarities in general DFCPs between the 2 groups identified 6 brain areas belonging to the so-called pain matrix. Our findings provide insight into the neural mechanisms of migraine while also identifying neuroimaging biomarkers that can aid in the diagnosis or monitoring of migraine patients.
Migraine is a headache disorder characterized by pulsating recurrent pain attacks combined with nausea, vomiting, sleep disorder, and hypersensitivity to visual, auditory, olfactory, and somatosensory stimuli . Migraine affects approximately 14.7% of the global population and has a hereditary component ; because of the high morbidity and difficulty in treatment, migraine can severely limit patients’ work efficiency and quality of life. Although many theories have been proposed for the etiology of migraine (including the vasogenic, cortical spreading depression, and trigeminal vascular theories), the neurologic basis is not well understood.
Resting-state functional magnetic resonance imaging (rs-fMRI) technology is a noninvasive method for measuring the spontaneous activity of neurons  that has enabled the identification of several brain regions involved in the pathogenesis of migraine based on the amplitude of low-frequency fluctuations (ALFFs) in the resting state . For example, ALFF abnormalities have been observed in multiple brain regions in migraine patients including the right insular lobe, prefrontal cortex (PFC), and medial (m)PFC . Other studies have used regional homogeneity (ReHo) to analyze the synchronization of local activity in the brain  and have found altered ReHo values in multiple brain regions in migraine patients such as those related to pain [7–9]. The causes of migraine have also been explored by analyzing correlations in activity between a predefined seed region and other brain areas; it was found that functional connectivity (FC) between some seed points (e.g., cerebellum, insula, frontal lobe, cingulate gyrus, superior marginal gyrus, and brainstem) and other regions was increased or decreased in migraine, resulting in changes in the integration of pain information [10–12]. Additionally, independent component analysis (ICA), temporal clustering analysis, and small-world network theory [13–17] have been applied to the study of migraine and have revealed that long-term repetitive pain stimulation can lead to abnormal synergistic processing and topologic abnormalities in brain functional networks [18, 19].
Although the abovementioned studies have provided insight into the neurologic mechanisms of migraine, they involved the analysis of static rs-fMRI data. Meanwhile, the brain exhibits complex spatial and temporal variations during dynamic processing as well as functional activity alterations in the resting state [20, 21] that must be taken into account. Dynamic (d)FC analysis evaluates brain activity fluctuations on the scale of seconds to minutes [22, 23] and has been used to establish activity profiles of thalamocortical in migraine patients . Combined with Group ICA, dFC in brain networks has also been examined to find the functional characteristics of the migraine brain and revealed more functional networks related to migraine than the conventional static analysis . Based on comparing dynamic functional connectivity patterns in migraine versus persistent posttraumatic headache, significant differences between migraine and persistent posttraumatic headache for 10 region pairs were found . From the perspective of multichannel hierarchy, dFC combined topology properties have been investigated between large-scale brain networks in migraine patients, and results showed that the dynamic FCs and corresponding global topology properties have significant differences between migraine patients and healthy controls, while local topological properties and dynamic fluctuations were easily affected by window widths .
The above findings suggest that migraine can be investigated in terms of functional dynamics. To this end, in this study, we used an auto- (A-) DFCM with twice-clustering to establish a dFC profile in migraine based on rs-fMRI data. We speculated that in addition to migraine-specific dFC patterns (DFCPs), there are general DFCPs that are also present in both subjects. The results showed that the specific pattern and the particular brain regions can be detected for migraine patients, which can be useful for the clinical diagnosis of migraine.
2. Materials and Methods
2.1. Data Acquisition
A total of 34 migraineurs (19 males and 15 females; average age: 36.12 years (range: 17–58 years)) were recruited at the Department of Neurology of Shanghai Sixth People’s Hospital East Affiliated with Shanghai University of Medicine and Health Science. All procedures were approved by the Independent Ethics Committee of Shanghai Sixth People’s Hospital East Campus, and all participants provided informed consent before participating in the study. Migraine patients were diagnosed with chronic migraine according to International Classification of Headache Disorders 3rd Edition (beta version) criteria . rs-fMRI data were acquired using a 3 T scanner (Siemens, Erlangen, Germany). During the scan, subjects were awake and were instructed not to think and to remain still. The scanning parameters were as follows: (covering all brain areas), s, number of time , scan , on-chip mm, and slice mm. rs-fMRI data of 34 normal control subjects (14 males and 20 females; average age: 21.4 years (range: 18-26 years)) for the control group were obtained from a free public database (http://fcon_1000.projects.nitrc.org/fcpClassic/FcpTable.html) and were abbreviated as Beijing_Zhang which were released by Dr. Yu-Feng Zang; the parameters for the scans were as follows: slice (covering all brain areas), s, number of time , scan , on-chip mm, and slice mm. All of the above data had been used in a published paper . To check the repeatability of the consequence, additional rs-fMRI data of 34 normal control subjects (19 males and 15 females; average age: 36.18 years (range: 19-62 years)) were also obtained from a free public database (http://fcon_1000.projects.nitrc.org/fcpClassic/FcpTable.html) and were abbreviated as ICBM which were released by Alan C. Evans; the parameters for the scans were as follows: slice (covering all brain areas), s, and number of time . The value for ages was 0.9844 based on the unpaired -test with Welch’s correction and indicated no significant difference between ICBM and migraineurs, which means the data from ICBM were gender-matched and age-matched with the migraineur group.
2.2. Data Preprocessing
rs-fMRI data were preprocessed with Data Processing Assistant for Resting-State fMRI , which involved slice timing and head motion correction, spatial normalization, and spatial smoothing. Before slice timing correction, the first 10 time points were removed, and the middle slice was used as the reference frame for the correction. Sinc interpolation and 6° transformation were applied to eliminate temporal and spatial offsets, respectively. To minimize artifacts, data for which there was >1.5 mm displacement in any direction or head were discarded. Spatial normalization involved reslicing to mm using an echoplanar imaging template released by the Montreal Neurological Institute. A Gaussian kernel of 6 mm was applied to smooth the data.
2.3. A-DFCM with Twice-Clustering
The framework for A-DFCM with twice-clustering included dFC analysis using a sliding time window, an automatic segmentation algorithm, and -means clustering combined with hierarchical clustering (Figure 1). The first step involved extracting the time series of each region of interest (ROI). Based on the Pearson correlation, dFC matrices were constructed with the sliding time window method. An automatic segmentation algorithm was used to construct the whole-brain quasistable connectome pattern (WQCP) sample set (Section 2.4). A twice-clustering algorithm that included -means and hierarchical clustering was used to obtain cluster labels for each sample in a WQCP set. The specific and general DFCPs were identified by analyzing intergroup differences in the distribution ratio for each DFCP (Section 2.5). Local network metrics were calculated to identify brain regions that were important in the specific DFCP. Finally, significantly different dFCs were extracted with the independent 2-sample -test for each general DFCP; intersecting dFCs were identified as those existing in all general DFPCs and were used to evaluate differences between the 2 groups (Section 2.6).
2.4. Automatic Generation of WQCPs
For each subject, the Brainnetome Atlas  with 246 ROIs in 210 cortical and 36 subcortical subregions was used to extract the time series comprising preprocessed rs-fMRI signal values. The mean time series was calculated based on the average rs-fMRI signal values of each ROI. For each subject, the mean time series was defined as where (; ) is the average time signal value of all voxels in the th ROI at the th time point and is the length of time points.
As information processing in the brain changes over time, FC in the brain undergoes temporal transformation [20, 31]. A sliding time window  was used to evaluate FC dynamics. The mean time series was first partitioned into temporal segments; the segment in the th ROI at the th time point was expressed as where and ; is the window length; and step length is 1. We determined that was 12 for migraine patients and 18 for normal control subjects, with a time duration of 36 s.
The Pearson correlation between 2 temporal segments at the same time point in all ROIs was calculated to determine dFC, as shown below:
A dFC matrix was constructed with all dFC values at a given time point for the same subject. The dFC matrix at the th time point was defined as where , , and .
The dFC strength (dFCS) vector was obtained by adding all absolute values of dFC for the same ROI, as follows: where and .
All dFCS vectors were ordered according to time point, and the dFCS matrix of each subject was constructed as shown below:
The illustrated dFCS matrix was divided into several segments based on similarities in the color of adjacent rows. In previous work [33, 34], segment points were manually located; in order to improve efficiency in the present study, automatic localization was adopted by calculating the Euclidean distance between adjacent rows. If the distance between the th and th rows was larger than that between the th and th rows and between the th and th rows, then the point was selected as the segment point. A dFCS matrix is shown as a jet colormap in Figure 2 along with Euclidean distances between adjacent rows in the dFCS matrix (Figure 2); it can be seen that the segment points are the peak points in the Euclidean distance curve and separate the matrix into distinct components.
Once the segment points were located and marked, the dFCS matrix was divided into several sections; for each of these, the WQCP () vector was obtained by time averaging. WQCPs from all subjects were assembled to form the WQCP dataset, which was analyzed with a machine learning method to obtain brain DFCPs.
2.5. Identification of Specific/General DFCPs
Specific DFCPs describe the brain state specific to migraine patients, whereas general DFCPs show similarities and differences in the brain states of the 2 groups. In order to identify specific and general DFCPs, each WQCP sample in the WQCP dataset of the migraine and normal control groups was partitioned into different clusters by applying a twice-clustering algorithm that included -means and hierarchical clustering. In traditional -means clustering, initial cluster centers are randomly generated, which hinders the optimal performance of the algorithm and makes it inconvenient to use. Therefore, hierarchical clustering was used to determine the initial centers, and all WQCP samples were grouped into 17 clusters based on the Davies-Bouldin index ; these were considered the DFCPs that revealed dynamic functional layouts of the brain in the 2 states (i.e., migraine and normal). All dFC matrices matching each WQCP of each cluster were recaptured. Mean dFC matrices with a dimension of were obtained by averaging all dFC matrices in the time dimension for migraine patients, normal control subjects, and both groups and were defined as the respective centroids.
After the grouping procedure, each WQCP sample had a DFCP label from 1 to 17. The distribution ratio of WQCP samples in each DFCP for each subject was calculated. We also compared the distribution ratio between migraine patients and normal control subjects with the independent 2-sample -test for each DFCP using a threshold of . The DFCP was deemed specific if it showed a significant difference in the distribution ratio between the 2 groups; otherwise, it was considered a general DFCP.
2.6. Analysis of Specific/General DFCPs
For the specific DFCP, local network metrics were calculated based on its centroid in the migraine group for extraction of critical brain regions. For each node, 2 local metrics—i.e., degree  and participation coefficient —were calculated using the Brain Connectivity Toolbox (https://sites.google.com/site/bctnet/); these are described in Supplementary Table S1. Threshold values (i.e., ratio of the number of existing edges to the maximum possible number of edges in the graph [=30,135]) used in this study ranged from 10% to 40%. As there was a high correlation between metrics and threshold values for each node and no uniform criterion for threshold selection, the area under the curve (AUC) of each metric was calculated to eliminate threshold randomness .
Critical brain areas are often identified using degree and participation coefficient [39, 40]. The greater the degree of a node, the more edges are connected to that node; thus, the degree is the simplest and most common way of identifying key nodes. The participation coefficient is another index for evaluating the importance of nodes; a large coefficient indicates involvement in more modules and can be considered the center of information integration. In this study, we identified key brain areas based on and values >1 standard deviation above the mean for all nodes in the network .
For general DFCPs, intergroup differences were evaluated by comparing dFCs in the dFC matrices with the independent sample -test at a threshold value <(0.0001/30135). The number of dynamic functional connections in 1 dFC matrix was 30,135. Brain regions corresponding to the detected dynamic functional connections were identified.
3.1. Ratio Distribution of WQCP Samples under Resampling
A total of 17 DFCPs were extracted using the twice-clustering algorithm; DFCP4 differed significantly between migraine patients and healthy control subjects and was deemed a specific DFCP, while the remaining DFCPs were considered as general. Ratio distributions of WQCP samples corresponding to the migraine and normal control groups under 17 clusters were compared (Figure 3). DFCP4 showed a greater difference between the 2 groups than the other DFCPs; meanwhile, the ratio distribution was broader in migraine patients than in normal control subjects, implying that DFCP4 comprised a large number of samples from the former but few from the latter and could thus be a DFCP specific to migraine.
We evaluated the reproducibility of the data by random resampling. Ratio distributions under 4 resampling processes with a sampling rate of 50% and 4 with a sampling rate of 90% showed 1 cluster that differed significantly between the 2 groups (Supplementary Figure S1). There was a strong correlation between this cluster and DFCP4, indicating that it corresponded to the specific DFCP. Correlation coefficients are listed in Supplementary Table S2.
In order to illustrate the differences caused by different window lengths, we computed the DFCPs based on the window length of 12 s and 60 s using the Beijing_Zhang dataset. Ratio distributions for the window length of 12 s and 60 s also demonstrated that there was 1 cluster that had the most significant difference between the 2 groups (Supplementary Figure S2). Besides that, the correlation coefficient (Supplementary Table S3) was strong between this cluster and DFCP4, representing that it was compatible with the specific DFCP.
For reasons of matching gender and age, we take the ICMP dataset for the control group with the window length for 12 s, 36 s, and 60 s to extract the DFCPs. Ratio distributions for the window length of 12 s, 36 s, and 60 s manifested that there was a significant difference in 1 cluster between the 2 groups (Supplementary Figure S3), which also has a strong correlation with DFCP4 implying that it was consistent with the specific DFCP. Correlation coefficients are listed in Supplementary Table S4.
3.2. Specific DFCP
A full matrix view of DFCP4 for the migraine group is shown in Figure 4(a), and connectivity patterns with a projected onto a standard brain surface are shown in Figure 4(b) as previously described [33, 34]. The degree and participation coefficient of DFCP4 were calculated in order to identify brain areas critical for migraine. ROIs whose AUC value of degree or participation coefficient was >1 standard deviation above the mean value in DFCP4 are shown in Figure 5; the critical ROIs detected by the intersection of these 2 types of ROI are shown in Table 1. Figure 6 shows the critical ROIs for DFCP4 projected onto a standard brain surface; this was visualized, and connectivity strength was determined, using BrainNetViewer .
3.3. General DFCPs and Intergroup Differences
The 16 general DFCPs were visualized and projected onto a standard brain surface (Figure 7). The strength of the edges was >0.75. Figure 8 shows information pertaining to the 16 general DFCPs for the migraine and normal control groups. By analyzing the intersection of significantly different dFCs in each general DFCP, we identified 3 dFCs that were present in all general DFCPs; these were projected onto the cortical surface (Figure 9). And the ROIs of the 3 dFCs were mainly distributed in Brodmann area 10, Brodmann area 32, the basal ganglia, and the thalamus. Detailed information about each brain region in the 3 dFCs is presented in Table 2.
ROI descriptions and abbreviations were obtained from the Brainnetome Atlas .
4.1. DFCP Specific to Migraine
The results of this study demonstrate that migraine is associated with a specific DFCP. Several neuroimaging studies have shown that pain elicits activity across a network of brain regions (referred to as the pain matrix) that includes the primary (S1) and secondary (S2) somatosensory cortices, anterior cingulated cortex (ACC), supplementary motor cortex area, PFC, thalamus, amygdala, basal ganglia, and insula [43–45]. The sensation of pain is thought to be caused not only by activation of 1 or more specific brain regions in the pain matrix but also by information flow and integration in these areas [46, 47]. Brodmann area 10 may play an important role in the collation, integration, and high-level processing of nociceptive information and pain . In addition, imaging studies have revealed abnormal activity in brain regions associated with pain information processing in migraine patients, including the ACC, thalamus, insula, and PFC [49–51]. In the present study, DFCP4 brain regions with strong connectivity included Brodmann area 1/2/3 (primary somatosensory cortex in the postcentral gyrus—i.e., S1), Brodmann area 6 (secondary motor cortex—i.e., S2), Brodmann area 10 (anterior PFC), Brodmann areas 24 and 32 (ventral and dorsal ACCs, respectively), insular gyrus, basal ganglia, and thalamus (Figure 4), indicating that these ROIs are closely related to pain processing. ROIs that are not part of the pain matrix but have also been linked to migraine or pain were Brodmann area 4 (primary motor cortex), Brodmann area 5 (superior parietal lobule), Brodmann area 7 (visuomotor coordination), posterior parietal cortex, and medioventral occipital cortex, which is consistent with findings from previous studies on migraine and pain. For instance, stimulation of the motor cortex has been used to treat chronic pain , and stimulation of Brodmann’s area 5/7 revealed this region as being among the most closely associated with pain perception . FC in the left posterior cingulate cortex (PCC) was found to be increased in migraineurs without aura . The involvement of the visual cortex could explain why migraine patients experience photophobia. Thus, DFCP4 identified in this study may reflect the neurologic mechanisms of migraine.
In order to investigate this DFCP in greater detail, we analyzed network metrics. According to the degree, the selected ROIs in DFCP4 were mainly distributed in Brodmann areas 1/2/3, 4, 8, 23, and 37; occipital lobe, basal ganglia; and thalamus. According to participation coefficients, the selected ROIs in DFCP4 were mainly distributed in Brodmann areas 1/2/3 (lower limb region), 4 (lower limb region), 8 (medial region), 23 (ventral area), and 37 (dorsolateral area); caudoposterior superior temporal sulcus; occipital lobe, basal ganglia; and thalamus. From the intersection of the two sets of ROI, we identified 16 critical ROIs that were mainly distributed in Brodmann areas 1/2/3 (lower limb region), 8 (medial region), and 23 (ventral area); occipital lobe; basal ganglia; and thalamus. Brodmann areas 1/2/3 and 8, basal ganglia, and thalamus belong to the pain matrix whereas Brodmann area 23 and occipital lobe are implicated in migraine.
The functions of ROI1 include language cognition, working memory, and pain anticipation ; ROI66 has been linked to pain localization, movement, and swallowing; ROI181 and ROI182 are involved in cognition and emotion; and ROI191, ROI192, ROI195, ROI197, and ROI198 are related to memory, cognition, and visual perception. Besides their involvement in pain, ROI221, ROI231, ROI234, and ROI235 are associated with the imagination and execution of actions; ROI239 is implicated in the execution of actions; and ROI245 and ROI246 are involved in pain monitoring, pain perception in somesthesis, and execution of actions. Of the 16 ROIs in DFCP4, 9 were related to pain processing. Additionally, emotion, cognition, action, and vision are influenced in migraine, which could explain why migraine patients may experience vision and memory problems as well as cognition dysfunction [56, 57].
4.2. Similarities and Differences in General DFCPs
There were 16 general DFCPs that reflected similarities in brain function between migraine patients and normal subjects. In the resting state, we observed temporal variations in FC patterns (Figures 7 and 8), which is consistent with previous reports [31, 33, 34]. All of the general DFCPs involved several regions of the default mode network (DMN) [58, 59], which is associated with dFC . The core areas in the DMN are the mPFC, PCC, superior frontal cortex, precuneus, inferior parietal lobule, lateral temporal cortex, and parahippocampal gyrus [61, 62]. In addition to having overlapping brain regions, each DFCP differed from the DMN. The ROIs of DFCP14 and DFCP15 were the most similar to the DMN, with direct connections between functional hubs such as PCC and mPFC. Moreover, these two DFCPs covered the parietal and occipital lobes, with sparser connections in DFCP15 than in DFCP14. DFCP1, DFCP2, and DFCP3 involved DMN activities but had more interhemispheric connections in the parietal lobe, insular lobe, basal ganglia, and thalamus. Besides connections in the DMN, DFCP5 DFCP6, and DFCP17 showed more interhemispheric connections in the parietal, frontal, and occipital lobes; DFCP6 involved more frontal lobe activity whereas DFCP17 had a higher density of connections, especially in the visual area. DFCP8, DFCP13, and DFCP16 also exhibited activities in the DMN but showed greater FC in the frontal and temporal lobes and subcortical nuclei, with DFCP8 and DFCP13 involving more connections in the frontal and occipital lobes, respectively. DFCP10 and DFCP3 involved activities in the DMN; the former had more interhemispheric connections in subcortical nuclei and the latter in the frontal lobe and thalamus, with more long-distance connections. DFCP12 had connections in the parietal and frontal lobes with long connections between these 2 areas. DFCP7 showed the highest degree of complexity and the largest number of connections in all brain regions, indicating that the brain is highly active in the resting state [33, 34]; this is evidenced by the fact that it consumes approximately 20% of the energy produced by the body while accounting for just 2% of total body weight [63, 64]. DFCP9 had just a few sparse connections, demonstrating that the brain was in a true resting state.
Migraine patients exhibited abnormal dFC in general DFCPs compared to normal control subjects (Figure 8). Three pairs of dFCs were present in each DFCP (Figure 9 and Table 2). The ROIs of these dFCs were distributed in A10m (Brodmann area 10 in the superior frontal lobe), A32sg (Brodmann area 32 in ACC), basal ganglia, and thalamus and are components of the pain matrix. Thus, even among general DFCPs, there are functional differences in those ROIs that may have clinical significance for migraine.
4.3. Static FC and DFCP Specific to Migraine
In this paper, the critical ROIs of the static network were extracted in the same way based on static functional connectivity, which was referred to as Supplementary Table S5. According to the two attributes, 15 critical ROIs can be extracted. Compared with DFCP4, ROI181, ROI182, ROI195, and ROI197 were extracted at the same time. The ROIs in the static network were mainly in the frontal lobe, limbic lobe, and occipital lobe. In addition to the above brain regions, the specific DFCP also extracted the brain regions distributed in basic ganglia and subcortical nucleus, which were also associated with migraine in previous studies. It could be seen that these were the critical ROIs revealed by changing a time scale from static to dynamic functional connectivity, which can provide different perspectives and references to understand the neural mechanism of migraine.
4.4. Different Dataset and Different Window Lengths
According to the results, the specific DFCPs obtained from different datasets and different window lengths have a strong correlation. This may be caused by the following reasons. First of all, this paper uses the method of segment, averaging, and clustering, which may reduce the impact of different window lengths. As no matter how long the window length is, the dFCS matrix would be automatically divided into different segments then be averaged, which might reduce the inconsistency caused by different window lengths. Secondly, when the time scale becomes dynamic and smaller, it can better reveal the fine information of network nodes that may not be revealed by the static network and might reduce the impact of different TR from different datasets. Therefore, the specific DFCP obtained by this method has certain reliability and repeatability.
4.5. Segmenting and Clustering
In previous studies [65, 66], dynamic functional connectivity was used to consider a single sample for the clustering approach which is an excellent approach. In our study, it could be seen from Figure 2 that adjacent dFCS are similar in color, so the illustrated dFCS matrix could be divided into several segments based on similarities in the color of adjacent rows to reduce the calculation amount and improve efficiency. For this reason, we adopt the method of segmentation in advance and then clustering. Furthermore, the approach of automatic localization can avoid the error caused by humans, which is beneficial to the wide application of this method.
4.6. Limitations and Future Directions
This study had some limitations. Firstly, we did not analyze the various subtypes of migraine, which may have distinct DFCPs. Secondly, the temporal relationships between DFCPs were not investigated. In future studies, we will construct a model based on the migraine-specific DFCP and associated ROIs that can serve as a diagnostic reference for clinicians and validate the specificity and sensitivity of this model.
In this study, we used the A-DFCM with twice-clustering to elucidate the neurologic basis of migraine patients. In this model, a novel method of automatically generating WQCPs from rs-fMRI data improved the efficiency and accuracy of segmentation, and -means clustering combined with hierarchical clustering eliminated randomness. Using this approach and the independent 2-sample -test, we identified 17 DFCPs including 16 that were general and 1 that was closely related to the pathologic features of migraine and could serve as a sensitive and specific neuroimaging diagnostic biomarker. Another important finding of our work was that the general DFCPs were associated with 6 critical brain areas and are thus complementary neuroimaging features that can help to distinguish migraine patients from normal subjects.
The data of migraineurs were obtained from the Department of Neurology of Shanghai Sixth People's Hospital East Affiliated to Shanghai University of Medicine & Health Science and were approved by the Independent Ethics Committee of Shanghai Sixth People's Hospital East Campus. According to the Regulations on Human Genetic Resources Management published by the Chinese government and in order to ensure the privacy of patients, these data are not available. The data of normal controls were obtained from a free public database which can be accessed at http://fcon_1000.projects.nitrc.org/fcpClassic/FcpTable.html.
Conflicts of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
WN, WZ, JY, and NW designed the study. WN and JY performed the experiments. WN, LZ, YL, and DC analyzed the data. WN, WZ, JD, and YS wrote the manuscript.
This work was supported by the National Natural Science Foundation of China (Grant No. 31870979, No. 61701318, No. 61701298, and No. 61906117), Pudong New Area Science and Technology Development Fund (Grant No. PKJ2014-Y08), SUMHS seed foundation project (Grant No. SFP-18-20-14-006), Shanghai Sailing Program (Grant No. 19YF1419000), and Science and Technology Support Projects of the Shanghai Science and Technology Committee (Grant No. 19411971400).
The online version of this article contains supplementary material, which includes the supporting tables and figures for this paper and is available to authorized users. (Supplementary Materials)
- T. J. Schwedt, C.-C. Chiang, C. D. Chong, and D. W. Dodick, “Functional MRI of migraine,” The Lancet Neurology, vol. 14, no. 1, pp. 81–91, 2015.
- T. J. Steiner, L. J. Stovner, and G. L. Birbeck, “Migraine: the seventh disabler,” The Journal of Headache and Pain, vol. 53, no. 2, pp. 227–229, 2013.
- S. Ogawa, T. M. Lee, A. R. Kay, and D. W. Tank, “Brain magnetic resonance imaging with contrast dependent on blood oxygenation,” Proceedings of the National Academy of Sciences of the United States of America, vol. 87, no. 24, pp. 9868–9872, 1990.
- Y. F. Zang, Y. He, C. Z. Zhu et al., “Altered baseline brain activity in children with ADHD revealed by resting-state functional MRI,” Brain & Development, vol. 29, no. 2, pp. 83–91, 2007.
- C. Fu, K. Li, H. Liu et al., “Abnormal amplitude of low-frequency fluctuation during the resting-state functional magnetic resonance imaging in migraine patients without aura,” Chinese Journal of Integrative Medicine on Cardio/Cerebrovascular Disease, vol. 13, pp. 1833–1836, 2015.
- Y. Zang, T. Jiang, Y. Lu, Y. He, and L. Tian, “Regional homogeneity approach to fMRI data analysis,” NeuroImage, vol. 22, no. 1, pp. 394–400, 2004.
- K. Li, Z. Yong, Y. Ren, H. Zhang, Z. Tan, and Y. Zou, “Study on the cortex regional homogeneity based on functional magnetic resonance imaging in migraine patients without aura,” Chinese Journal of Integrative Medicine on Cardio/Cerebrovascular Disease, vol. 13, pp. 181–184, 2015.
- Z. Xi, W. Zhihong, Z. Yang et al., “Altered cortical and subcortical local coherence in migraine with and without aura: evidence from resting-state fMRI,” Zhonghua Yi Xue Za Zhi, vol. 95, pp. 3196–3200, 2015.
- D. Yu, K. Yuan, L. Zhao et al., “Regional homogeneity abnormalities in patients with interictal migraine without aura: a resting-state study,” NMR in Biomedicine, vol. 25, no. 5, pp. 806–812, 2012.
- L. Fan, H. Li, J. Zhuo et al., “The human brainnetome atlas: a new brain atlas based on connectional architecture,” Cerebral Cortex, vol. 26, no. 8, pp. 3508–3526, 2016.
- L. Ren, X. Zhang, Z. Wang, J. Cheng, D. Zhang, C. Wang et al., “Migraine and resting-state functional connectivity of the brain,” Journal of Brain and Nervous Diseases, vol. 22, pp. 188–191, 2014.
- Y. Zhang, Y. Ren, S. Li, Z. Tan, and Y. Zou, “Study on default mode network based on resting-state in migraine patients without aura,” Chinese Journal of Integrative Medicine on Cardio/Cerebrovascular Disease, vol. 12, pp. 570-571, 2014.
- B. B. Biswal and J. L. Ulmer, “Blind source separation of multiple signal sources of fMRI data sets using independent component analysis,” Journal of Computer Assisted Tomography, vol. 23, no. 2, pp. 265–271, 1999.
- Y. Shi, W. Zeng, N. Wang, and D. Chen, “A novel fMRI group data analysis method based on data-driven reference extracting from group subjects,” Computer Methods and Programs in Biomedicine, vol. 122, no. 3, pp. 362–371, 2015.
- Y. Shi, W. Zeng, N. Wang, and L. Zhao, “A new constrained spatiotemporal ICA method based on multi-objective optimization for fMRI data analysis,” IEEE Transactions on Neural Systems and Rehabilitation Engineering, vol. 26, no. 9, pp. 1690–1699, 2018.
- T. Uehara, T. Yamasaki, T. Okamoto et al., “Efficiency of a “small-world” brain network depends on consciousness level: a resting-state fMRI study,” Cerebral Cortex, vol. 24, pp. 1529–1539, 2014.
- J. Wang, S. Qiu, Y. Xu et al., “Graph theoretical analysis reveals disrupted topological properties of whole brain functional networks in temporal lobe epilepsy,” Clinical Neurophysiology, vol. 125, no. 9, pp. 1744–1756, 2014.
- D. Chen, J. Yang, W. Zeng, Y. Xu, L. Jiao, and N. Lei-Jiao Wang, “Brain functional connectivity investigation of patients with migraine based on complex networks analysis,” Chinese Journal of Medical Imaging, vol. 23, pp. 418–422, 2015.
- T. Xue, K. Yuan, L. Zhao et al., “Intrinsic brain network abnormalities in migraines without aura revealed in resting-state fMRI,” PLoS One, vol. 7, no. 12, article e52927, 2012.
- V. D. Calhoun, R. Miller, G. Pearlson, and T. Adalı, “The chronnectome: time-varying connectivity networks as the next frontier in fMRI data discovery,” Neuron, vol. 84, no. 2, pp. 262–274, 2014.
- C. Chang and G. H. Glover, “Time–frequency dynamics of resting-state brain connectivity measured with fMRI,” NeuroImage, vol. 50, no. 1, pp. 81–98, 2010.
- R. M. Hutchison, T. Womelsdorf, E. A. Allen et al., “Dynamic functional connectivity: promise, issues, and interpretations,” NeuroImage, vol. 80, pp. 360–378, 2013.
- M. G. Preti, T. A. Bolton, and D. Van De Ville, “The dynamic functional connectome: state-of-the-art and perspectives,” NeuroImage, vol. 160, pp. 41–54, 2017.
- Y. Tu, Z. Fu, F. Zeng et al., “Abnormal thalamocortical network dynamics in migraine,” Neurology, vol. 92, no. 23, pp. e2706–e2716, 2019.
- M. J. Lee, B.-Y. Park, S. Cho, H. Park, S.-T. Kim, and C.-S. Chung, “Dynamic functional connectivity of the migraine brain: a resting-state functional magnetic resonance imaging study,” Pain, vol. 160, no. 12, pp. 2776–2786, 2019.
- G. Dumkrieger, C. D. Chong, K. Ross, V. Berisha, and T. J. Schwedt, “Static and dynamic functional connectivity differences between migraine and persistent post-traumatic headache: a resting-state magnetic resonance imaging study,” Cephalalgia, vol. 39, no. 11, pp. 1366–1381, 2019.
- Y. Shi, W. Zeng, N. Wang, and J. Yang, “Multi-channel hierarchy functional integration analysis between large-scale brain networks for migraine: an fMRI study,” NeuroImage: Clinical, vol. 28, p. 102462, 2020.
- Headache Classification Committee of the International Headache Society, “The international classification of headache disorders, 3rd edition (beta version),” Cephalalgia, vol. 33, no. 9, pp. 629–808, 2013.
- C.-G. Yan and Y.-F. Zang, “DPARSF: a MATLAB toolbox for “pipeline” data analysis of resting-state fMRI,” Frontiers in Systems Neuroscience, vol. 4, p. 13, 2010.
- K. Fan, L. Ren, X. Zhang et al., “Abnormalities on resting-state functional magnetic resonance imaging in migraine with aura patients during interictal period,” Journal of Brain and Nervous Diseases, vol. 24, pp. 95–99, 2016.
- S. M. Smith, K. L. Miller, S. Moeller et al., “Temporally-independent functional modes of spontaneous brain activity,” Proceedings of the National Academy of Sciences of the United States of America, vol. 109, no. 8, pp. 3131–3136, 2012.
- X. Zhang, L. Guo, X. Li et al., “Characterization of task-free and task-performance brain states via functional connectome patterns,” Medical Image Analysis, vol. 17, no. 8, pp. 1106–1122, 2013.
- X. Li, D. Zhu, X. Jiang et al., “Dynamic functional connectomics signatures for characterization and differentiation of PTSD patients,” Human Brain Mapping, vol. 35, no. 4, pp. 1761–1778, 2014.
- N. Wang, W. Zeng, Y. Shi, and H. Yan, “Brain functional plasticity driven by career experience: a resting-state fMRI study of the seafarer,” Frontiers in Psychology, vol. 8, p. 1786, 2017.
- D. L. Davies and D. W. Bouldin, “A cluster separation measure,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. PAMI-1, no. 2, pp. 224–227, 1979.
- M. Rubinov and O. Sporns, “Complex network measures of brain connectivity: uses and interpretations,” NeuroImage, vol. 52, no. 3, pp. 1059–1069, 2010.
- R. Guimerà and L. A. Nunes Amaral, “Functional cartography of complex metabolic networks,” Nature, vol. 433, no. 7028, pp. 895–900, 2005.
- S. Achard and E. Bullmore, “Efficiency and cost of economical brain functional networks,” PLoS Computational Biology, vol. 3, no. 2, article e17, 2007.
- R. L. Buckner, J. Sepulcre, T. Talukdar et al., “Cortical hubs revealed by intrinsic functional connectivity: mapping, assessment of stability, and relation to Alzheimer’s disease,” The Journal of Neuroscience, vol. 29, no. 6, pp. 1860–1873, 2009.
- J. D. Power, B. L. Schlaggar, C. N. Lessov-Schlaggar, and S. E. Petersen, “Evidence for hubs in human functional brain networks,” Neuron, vol. 79, no. 4, pp. 798–813, 2013.
- T. Itahashi, T. Yamada, H. Watanabe et al., “Altered network topologies and hub organization in adults with autism: a resting-state fMRI study,” PLoS One, vol. 9, no. 4, article e94115, 2014.
- M. Xia, J. Wang, and Y. He, “BrainNet viewer: a network visualization tool for human brain connectomics,” PLoS One, vol. 8, no. 7, article e68910, 2013.
- R. Peyron, M. Frot, F. Schneider et al., “Role of operculoinsular cortices in human pain processing: converging evidence from PET, fMRI, dipole modeling, and intracerebral recordings of evoked potentials,” NeuroImage, vol. 17, no. 3, pp. 1336–1346, 2002.
- R. D. Treede, D. R. Kenshalo, R. H. Gracely, and A. K. Jones, “Cortical representation of pain,” Pain, vol. 15, no. 1, pp. 3–5, 1992.
- G. N. Verne, M. E. Robinson, and D. D. Price, “Representations of pain in the brain,” Current Rheumatology Reports, vol. 6, no. 4, pp. 261–265, 2004.
- A. Mouraux, A. Diukova, M. C. Lee, R. G. Wise, and G. D. Iannetti, “A multisensory investigation of the functional significance of the "pain matrix",” NeuroImage, vol. 54, no. 3, pp. 2237–2249, 2011.
- I. Tracey, “Nociceptive processing in the human brain,” Current Opinion in Neurobiology, vol. 15, no. 4, pp. 478–487, 2005.
- K. Peng, S. C. Steele, L. Becerra, and D. Borsook, “Brodmann area 10: collating, integrating and high level processing of nociception and pain,” Progress in Neurobiology, vol. 161, pp. 1–22, 2018.
- R. Peyron, B. Laurent, and L. García-Larrea, “Appreciation par l'imagerie fonctionnelle des reponses cerebrales a la douleur. Revue et meta-analyse,” Neurophysiologie Clinique/Clinical Neurophysiology, vol. 30, no. 5, pp. 263–288, 2000.
- I. Tracey, “Neuroimaging of pain mechanisms,” Current Opinion in Supportive and Palliative Care, vol. 1, no. 2, pp. 109–116, 2007.
- T. Xue, K. Yuan, P. Cheng et al., “Alterations of regional spontaneous neuronal activity and corresponding brain circuit changes during resting-state in migraine without aura,” NMR in Biomedicine, vol. 26, no. 9, pp. 1051–1058, 2013.
- J.-P. Lefaucheur, X. Drouot, P. Cunin et al., “Motor cortex stimulation for the treatment of refractory peripheral neuropathic pain,” Brain, vol. 132, no. 6, pp. 1463–1471, 2009.
- A. V. Apkarian, A. Darbar, B. R. Krauss, P. A. Gelnar, and N. M. Szeverenyi, “Differentiating cortical areas related to pain perception from stimulus identification: temporal analysis of fMRI activity,” Journal of Neurophysiology, vol. 81, no. 6, pp. 2956–2963, 1999.
- J. Zhang, J. Su, M. Wang et al., “Increased default mode network connectivity and increased regional homogeneity in migraineurs without aura,” The Journal of Headache and Pain, vol. 17, no. 1, p. 98, 2016.
- Y. Chen, H. Liu, Z. Jin, G. Liu, and Q. Zhang, “Functional activity mapping during anticipation of dental pain,” Hua Xi Kou Qiang Yi Xue Za Zhi, vol. 24, no. 2, pp. 121–124, 2006.
- F. Le Pira, G. Zappalà, S. Giuffrida et al., “Memory disturbances in migraine with and without aura: a strategy problem?” Cephalalgia, vol. 20, no. 5, pp. 475–478, 2000.
- S. Vale, “How migraines impact cognitive function: findings from the Baltimore ECA,” Neurology, vol. 69, no. 8, pp. 810–810, 2007.
- M. D. Fox and M. E. Raichle, “Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging,” Nature Reviews. Neuroscience, vol. 8, no. 9, pp. 700–711, 2007.
- M. E. Raichle, A. M. MacLeod, A. Z. Snyder, W. J. Powers, D. A. Gusnard, and G. L. Shulman, “A default mode of brain function,” Proceedings of the National Academy of Sciences of the United States of America, vol. 98, no. 2, pp. 676–682, 2001.
- X. Liang, Q. Zou, Y. He, and Y. Yang, “Coupling of functional connectivity and regional cerebral blood flow reveals a physiological basis for network hubs of the human brain,” Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no. 5, pp. 1929–1934, 2013.
- R. L. Buckner, J. R. Andrews-Hanna, and D. L. Schacter, “The brain’s default network,” Annals of the New York Academy of Sciences, vol. 1124, no. 1, pp. 1–38, 2008.
- D. A. Fair, A. L. Cohen, N. U. F. Dosenbach et al., “The maturing architecture of the brain’s default network,” Proceedings of the National Academy of Sciences of the United States of America, vol. 105, no. 10, pp. 4028–4032, 2008.
- M. E. Raichle and D. A. Gusnard, “Appraising the brain’s energy budget,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 16, pp. 10237–10239, 2002.
- D. Zhang and M. E. Raichle, “Disease and the brain’s dark energy,” Nature Reviews. Neurology, vol. 6, no. 1, pp. 15–28, 2010.
- D. K. Saha, E. Damaraju, B. Rashid, A. Abrol, S. Plis, and V. Calhoun, “A classification-based approach to estimate the number of resting functional magnetic resonance imaging dynamic functional connectivity states,” Brain Connectivity, vol. 11, no. 2, pp. 132–145, 2021.
- Q. Zhou, L. Zhang, J. Feng, and C. Z. Lo, “Tracking the main states of dynamic functional connectivity in resting state,” Frontiers in Neuroscience, vol. 13, p. 685, 2019.
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