Comparative Analysis on Alignment-Based and Pretrained Feature Representations for the Identification of DNA-Binding Proteins

Table 1

Summary of features designed in this comparative study in which for PSSMS and PSSMR representations and for ESM representation.

Index	Description about the feature category	Abbreviation	#Features
1	Average representation over all residue-level feature vectors
2	Average representation over -separation residues started with the th residue	,
3	Average representation over residues with a specific amino acid type	,
4	Average representation over correlations between two residues given sequence distance	,