Complexity

Research Article

miRNA-Disease Association Prediction with Collaborative Matrix Factorization

Table 2

We implemented CMFMDA to prioritize candidate miRNAs for Kidney Neoplasms based on known associations in the HMDD database. As a result, 9 out of the top 10 and 41 out of the top 50 predicted Kidney Neoplasms related miRNAs were confirmed based on miR2Disease and dbDEMC (1st column: top 1–25; 2nd column: top 26–50).
miRNAEvidencemiRNAEvidence
hsa-mir-429dbDEMChsa-mir-34cdbDEMC
hsa-mir-200bdbDEMC, miR2Diseasehsa-mir-10bdbDEMC
hsa-mir-200adbDEMChsa-mir-9dbDEMC
hsa-mir-210dbDEMC, miR2Diseasehsa-mir-199bdbDEMC
hsa-mir-203dbDEMChsa-mir-99bdbDEMC
hsa-mir-218dbDEMChsa-mir-126dbDEMC, miR2Disease
hsa-mir-127dbDEMChsa-mir-224dbDEMC
hsa-mir-155dbDEMChsa-mir-195dbDEMC
hsa-mir-205dbDEMC, miR2Diseasehsa-mir-145dbDEMC
hsa-mir-196adbDEMChsa-mir-7dbDEMC, miR2Disease
hsa-mir-143dbDEMChsa-mir-142Unconfirmed
hsa-mir-135aUnconfirmedhsa-mir-139dbDEMC
hsa-mir-92aUnconfirmedhsa-mir-16dbDEMC
hsa-mir-19adbDEMChsa-mir-183dbDEMC
hsa-mir-29cdbDEMC, miR2Diseasehsa-mir-296Unconfirmed
hsa-mir-146adbDEMChsa-mir-367Unconfirmed
hsa-mir-99adbDEMChsa-mir-15bdbDEMC
hsa-mir-101dbDEMC, miR2Diseasehsa-mir-204dbDEMC
hsa-mir-199adbDEMC, miR2Diseasehsa-mir-196bdbDEMC
hsa-mir-27adbDEMC, miR2Diseasehsa-mir-339dbDEMC
hsa-mir-100dbDEMChsa-mir-26adbDEMC, miR2Disease
hsa-mir-452dbDEMChsa-mir-302cUnconfirmed
hsa-mir-34bdbDEMChsa-mir-302bUnconfirmed
hsa-mir-93dbDEMChsa-mir-107dbDEMC
hsa-mir-34adbDEMChsa-mir-133bUnconfirmed