Research Article
Potential Retinoid X Receptor Agonists for Treating Alzheimer’s Disease from Traditional Chinese Medicine
Table 1
H-bond occupancy for key residues of RXR protein with Targretin and two candidates overall 20 ns molecular dynamics simulation.
| Name | H-bond Interaction | Occupancy |
| Targretin | Gln275:HE22/O25 | 1 | Gln275:HE22/O26 | 1 | Arg316:HH22/O25 | 17 |
| -lipoic acid | Ala241:HN/O10 | 10 | Ala241:HN/O12 | 3 | Gln275:HE22/O10 | 2 | Gln275:HE22/O12 | 2 | Ser312:HG1/O12 | 60 | Arg316:HH22/O10 | 89 | Arg316:HH22/O12 | 39 | Arg316:HH12/O10 | 96 | Arg316:HH12/O12 | 86 |
| Sulfanilic acid | Gln275:HE22/O9 | 1 | Gln275:HE22/O10 | 1 | Gln275:HE22/O11 | 2 | Arg316:HH22/O9 | 53 | Arg316:HH22/O10 | 45 | Arg316:HH22/O11 | 49 | Arg316:HH12/O9 | 25 | Arg316:HH12/O10 | 23 | Arg316:HH12/O11 | 16 | Ala327:HN/O9 | 39 | Ala327:HN/O10 | 24 | Ala327:HN/O11 | 17 |
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H-bond occupancy cutoff: 0.3 nm.
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