Probiotics and the Microbiome in Celiac Disease: A Randomised Controlled Trial

Table 7

GEE values for the opportunistic and pathogenic bacteria, fungi, and parasites.

Bacteria	Treatment	Time	Time by treatment
Total opportunistic bacteria	0.95	0.65	0.52
Morganella morganii	UAC	UAC	UAC
Citrobacter	UAC	UAC	UAC
Aeromonas sp.	0.98	UAC	UAC
Klebsiella pneumonia	UAC	UAC	UAC
Staphylococcus sp.	UAC	UAC	UAC
Achromobacter sp.	0.97	UAC	UAC
Klebsiella oxytoca	UAC	UAC	UAC
Helicobacter pylori	0.42	0.08	0.59
Enterohemorrhagic E. coli	UAC	UAC	UAC
Candida sp.	0.06	0.53	0.88
Saccharomyces sp.	0.04	0.41	0.34
General Parasite DNA detected with known taxonomy	0.830	0.016	0.841
Blastocystis hominis	0.211	0.137	0.343
Dientamoeba sp.	UAC	UAC	UAC
Parasite taxonomy unavailable	0.892	0.002	0.514
Trichuris trichiura	UAC	UAC	UAC
Enterobius vermicularis	UAC	UAC	UAC
Necator americanus	0.583	0.094	0.565

UAC denotes “unable to calculate” due to the specified organisms not being present in any participants in one or both treatment arms.